Eutrema salsugineum (saltwater cress): EUTSA_v10012672mg
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Entry
EUTSA_v10012672mg CDS
T02985
Name
(RefSeq) hypothetical protein
KO
K12580
CCR4-NOT transcription complex subunit 3
Organism
eus
Eutrema salsugineum (saltwater cress)
Pathway
eus03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
eus00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
EUTSA_v10012672mg
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
eus03019
]
EUTSA_v10012672mg
Messenger RNA biogenesis [BR:
eus03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
EUTSA_v10012672mg
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
EUTSA_v10012672mg
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Not3
NOT2_3_5_C
DUF5965
Motif
Other DBs
NCBI-GeneID:
18017557
NCBI-ProteinID:
XP_006400370
UniProt:
V4LPP4
LinkDB
All DBs
Position
Unknown
AA seq
845 aa
AA seq
DB search
MGASRKLQGEIDRVLKKVQEGVDVFDSIWNKVYDTDNVNQKEKFEADLKKEIKKLQRYRD
QIKTWIQSSEIKDKKVSASYEQSLVDARKLIEREMERFKICEKETKTKAFSKEGLGQQPK
TDPKEKAKSETRDWLNNVVSELESQIDSFEAELEGLSVKKGKTRPPRLTHLETSITRHKD
HIIKLELILRLLDNDELSPEQVNDVKDFLDDYVERNQDDFEEFSDVDELYSTLPLDEVEG
LEDLVTAGPLVKGTPLSMKSSLAASASQVRSISLPTHHQSTSQDKTEDTTLDSTSETLPK
TPPPKNGTSLHSAPSTPVGGRPSLNVPVSNVTNAPVALSTSIPVQTSTESMGSLSPVAAK
EEDATTLPTRKPPSSVADAQLRGIGRVGIPSQPQPSQPLSPSPANGARISATSAAEVAKR
NIMGVESNVQPLTSSLSKMVLPPTAKGNDGTISDSNPGDGAASIGRAFSPSIVSGSQWRP
GSPFQSQNETVRGRTEIAPDQREKFLQRLQQVQQGHGNLVGIPSLSGGNEKQFSSQQQNP
LLQQSSAISPHGSLGIQAPGFNVMSPASLQQQSNAMTQQLGQQPSVADVDHARNDDQLQQ
NLPDDSTSITASKTIPNEDESRGLFDTPSGMPSYMLDPVQVTRDGPDFSPGQPIQPGQPS
SSLGVIGRRSNSELGAIGDPSVVGPMHDQMHNLLMLEAAYCRLPQSKDSERPKPYSPRNP
TITPQTFPQTQAPIINNPLFWERLGSDTYGTDTMFFAFYYQQNSYQQYLAAKELKKQSWR
YHRKFNTWFQRHKEPLIATDEYEQGAYVYFDFQTPKDESKEGGWCQRIKNDFTFEYSYLE
DELVV
NT seq
2538 nt
NT seq
+upstream
nt +downstream
nt
atgggtgcgagtcgcaaattacaaggcgagatagatcgggtgcttaagaaggttcaggaa
ggtgttgatgttttcgacagcatctggaacaaggtatatgatacagataacgtaaaccaa
aaggaaaagtttgaggcggacttgaagaaggaaatcaagaagttgcagcggtatagagac
cagatcaagacatggattcagtccagtgagatcaaagataagaaagtcagtgcatcatat
gaacagtccctggtcgacgcacggaagctcattgagcgagagatggagaggtttaagatc
tgtgagaaagagaccaagacaaaagccttttctaaggaaggactgggtcagcaacctaaa
actgacccaaaagagaaggcaaagtcggagacaagggattggttgaacaatgtggtgagt
gaacttgagtcgcagattgatagctttgaagctgagttggaaggactctctgtcaaaaaa
ggaaagacacggccacccagattgacacatcttgagacatctattacaaggcacaaggat
catataataaagttggaattgatcttgaggcttttggacaatgatgaattaagtccagaa
caagtaaatgacgtcaaagattttctggacgattatgttgagcgaaatcaggatgatttt
gaagaatttagtgatgtcgatgagctctatagtacgttgccactagatgaggtggagggt
cttgaagatctagttactgctggccccctcgtcaagggtactcctttgagcatgaagagt
tctttggcagcgtcagcatctcaagttcggagtataagtttgccaacacatcatcagagt
acttctcaagataaaacagaggatacaactttggatagcacttctgagacacttccaaaa
acccctcccccaaagaatggcaccagccttcactcagcaccatcaacacccgttggggga
cgtccaagtttgaatgtgcccgtcagtaatgttacaaatgcaccagttgccttatccact
tctattcctgttcaaacttccacagaaagcatgggaagtttgtctcctgtggctgccaaa
gaagaagacgcaaccaccttgcctacccgtaaaccaccctcatctgttgctgatgctcag
ttgaggggcattggtagagttggtattcccagtcagccccaaccaagtcagcctctgtct
ccaagtccagccaatggagctcgcattagtgcaacttcagcagctgaagttgcaaagaga
aatataatgggagttgagagcaacgtccaacctttaacttcttcactgagcaaaatggta
ttgccaccaactgcgaagggtaatgatggaactatctctgatagtaaccctggtgatggt
gcggctagtatcggtagagctttctcaccgtccattgtatctggttcgcagtggaggcct
gggagtccctttcagagtcagaatgaaacggtccgtgggaggactgaaatagcaccagat
caaagagagaaatttttgcagcggttacagcaagtacaacaaggccacggtaacctcgta
ggcatcccttctctatctggaggaaacgagaagcagttttcttcacaacagcaaaatcct
cttttacagcagagctctgccatctctcctcatggtagcttgggaattcaggcaccaggt
ttcaatgtcatgagtcctgcctccttacagcagcagtcaaatgccatgactcagcaattg
ggtcagcagccttctgttgcagatgtagatcatgccagaaatgatgatcagctgcagcag
aacttacctgatgattcaacttccataacagcttcaaaaactattccaaatgaagatgag
tctagaggtctatttgatactccgtcgggaatgcccagctacatgttggatccagtacag
gtgactagagacggtccggatttctctcctggacaacccatacaacctggtcaaccttca
agtagccttggggtcattggtcgtagaagtaactcagaattaggagccattggtgaccct
tcggttgtagggccgatgcatgatcaaatgcacaatctcctgatgcttgaagctgcttac
tgtagacttcctcaatccaaagattcagaacgtcctaaaccctattctccgaggaaccca
acaatcacaccccaaacgtttccccaaacgcaagcgccaatcataaacaatcctttgttc
tgggaacggttaggcagcgacacttatggaaccgatactatgttctttgcattttattat
cagcagaactcttatcagcaatatctagctgcaaaagagctgaagaaacagtcatggaga
taccacagaaagttcaacacttggtttcagagacataaagagccattgattgcaacagat
gagtatgaacaaggtgcctatgtttattttgatttccaaacaccaaaagacgagagtaaa
gaaggaggatggtgtcagaggatcaaaaacgacttcacgtttgaatacagttatctggaa
gatgaacttgtcgtgtag
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