Eutrema salsugineum (saltwater cress): EUTSA_v10012986mg
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Entry
EUTSA_v10012986mg CDS
T02985
Name
(RefSeq) hypothetical protein
KO
K12605
CCR4-NOT transcription complex subunit 2
Organism
eus
Eutrema salsugineum (saltwater cress)
Pathway
eus03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
eus00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
EUTSA_v10012986mg
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
eus03019
]
EUTSA_v10012986mg
Messenger RNA biogenesis [BR:
eus03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
EUTSA_v10012986mg
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
EUTSA_v10012986mg
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
NOT2_3_5_C
Motif
Other DBs
NCBI-GeneID:
18019331
NCBI-ProteinID:
XP_006400926
UniProt:
V4LF67
LinkDB
All DBs
Position
Unknown
AA seq
615 aa
AA seq
DB search
MSNLHSSLNGSASNLPDGSGRSFAASYSGQSGAPSPAFHHTGNLQGLHNIHGSYNVGNMQ
GTLTSRNSSMNSIPSAGVQQPNGSFSSGRFASNNLPALSQLSHGSSHGHSGIPNRGGINV
VGNPGFSSNANGVGGSIPGILSTSAGLSNRNSVPGMGNLSQLLGNAGPRITNSMGNMVGG
GNLGRNISSGGLSIPGLSSRLNLAANSGSGLNVQGQNRMLGGVLPQGSQVMSMLGNSYHS
GGGPLSQNHVQSVNNMMLSDHSNDSSLFDINNDFPQLTSRPGSAGGTQGQLGSLRKQGLG
VPIVQQNQEFSIQNEDFPALPGYKGGNSDYPMDLHQKEQLHDNAMSMMHSQNFSMARSGG
FNLGGTYPSHRPQQQPQHTSSTGGLQGLGLRPLSSPSAVSSNSYDQLIQQYQQHQNQSQF
PVQQMSSINQFRDSEMKSAQSEADPFCLLGLLDVLNRNNPELASLALGIDLTTLGLDLNS
TGNLYKTFASPWTNEPAKTDVEFTVPNCYYATPPPPLTRAIFKRFSYELLFYTFYSMPKD
EAQLHAADELYERGWFYHKEHRLWFFRVGEPLVRTAVYERGTYECLDPNSFKTVRKEHLV
VQYEHMEKRPSLMQH
NT seq
1848 nt
NT seq
+upstream
nt +downstream
nt
atgtcaaaccttcattcatctctcaatggttcagcttcgaatttacctgatgggtcgggc
agatcttttgctgcttcctattctggacaatctggtgcaccgtctcccgcttttcatcac
actggaaaccttcaggggcttcataatatacatgggagctataacgtcgggaacatgcaa
ggtacacttacatcaagaaactcaagtatgaatagtataccatctgctggggttcaacaa
cctaatgggagtttttccagtggaagatttgcttcaaataatctacctgctctctctcag
ttgtctcatggcagctctcatgggcattcgggaatcccaaatagaggaggtattaatgtt
gttggcaaccctgggtttagtagtaacgcaaatggagttggcggttctattcctgggatt
ctctccacatctgcaggactcagtaatcggaatagtgttccagggatgggaaatctctcc
cagttgttgggaaatgcaggtcctcgaataacaaattcaatgggaaatatggttggtgga
ggtaacttgggaaggaatattagctctggtggattgtcgattcctggtctttcttcacga
ctaaatttggcagctaatagcggatcaggattaaatgttcagggacagaaccgaatgctg
ggtggagtacttcctcaaggatctcaagtcatgtctatgctggggaactcctatcatagt
ggtggcggcccactttcgcagaaccatgttcagtcagttaacaatatgatgctcagtgat
cattctaacgacagctctctttttgacatcaacaacgattttccccagctgacaagccgc
cctggttctgctggtggcactcaaggacaactgggctctttgagaaaacaaggcttagga
gttccaattgtccaacaaaaccaggagttcagcatccaaaatgaagactttccagctcta
cctggatataaaggtggtaattctgattatccgatggatttgcatcagaaagaacaactc
catgacaatgctatgtcaatgatgcactctcaaaacttttctatggctagatctggtggt
ttcaacctggggggaacatatccatcacatcgcccacaacaacagccacaacatacttca
tctactggtggactacagggtcttggcttgagacctctaagctctcccagtgctgtttcc
agtaacagttatgaccagcttattcagcagtatcagcagcatcaaaatcaatcccagttt
cctgtgcaacaaatgtcatcgatcaaccagtttagagattctgagatgaaatcggcacag
tcagaggcagatccattttgcttgcttggcttgttagacgtactaaacaggaacaaccct
gaattggcctctcttgctcttggcatcgacttaacaacgctagggttagatttgaattca
actggtaatctctacaagacatttgcttccccttggaccaatgaaccggcaaagactgat
gtcgagttcacagtacccaattgttactacgccacaccacctccgcctctaactcgagca
attttcaaaaggttctcctacgagttattgttctacacattttacagtatgccaaaagac
gaagcacagctacacgcagcagatgaactttacgaacgaggttggttttaccacaaggaa
catagattatggttcttcagagttggggaacctttggtcaggacagctgtatatgaaaga
ggaacatacgaatgcctcgacccaaactcgttcaaaacagtcagaaaggagcatttggtt
gtccagtacgagcacatggaaaagagaccaagcttgatgcagcattga
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