Eutrema salsugineum (saltwater cress): EUTSA_v10013126mg
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Entry
EUTSA_v10013126mg CDS
T02985
Name
(RefSeq) hypothetical protein
KO
K10140
DNA damage-binding protein 2
Organism
eus
Eutrema salsugineum (saltwater cress)
Pathway
eus03420
Nucleotide excision repair
eus04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
eus00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
EUTSA_v10013126mg
09124 Replication and repair
03420 Nucleotide excision repair
EUTSA_v10013126mg
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
eus04121
]
EUTSA_v10013126mg
03400 DNA repair and recombination proteins [BR:
eus03400
]
EUTSA_v10013126mg
Ubiquitin system [BR:
eus04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
Cul4 complex
Target recognizing subunit (DCAF)
EUTSA_v10013126mg
DNA repair and recombination proteins [BR:
eus03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
Cul4-DDB2 complex
EUTSA_v10013126mg
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
WD40_Prp19
WD40
WD40_CDC20-Fz
Beta-prop_EIPR1
Beta-prop_EML
Beta-prop_TEP1_2nd
Beta-prop_RIG_2nd
Beta-prop_EML_2
WDR55
WD40_WDHD1_1st
Beta-prop_WDR75_1st
EIF3I
WD_LRWD1
WD40_RFWD3
WD40_MABP1-WDR62_2nd
Beta-prop_WDR90_POC16_2nd
Beta-prop_IFT140_1st
Motif
Other DBs
NCBI-GeneID:
18018579
NCBI-ProteinID:
XP_006401045
UniProt:
V4LRN3
LinkDB
All DBs
Position
Unknown
AA seq
565 aa
AA seq
DB search
MGLTRNRRKTDPEIVIARDTDSELSSEEEEEEEEEENYPLSELEEEDEAVKNGGRIELEK
NKAKGKAPITVKLKKVCKVCKQPGHEAGFKGATYIDCPMKPCFLCKMPGHTTMSCPHRVV
TDHGILPTSHRNTKNPIDFVFKRQLQSRIPPIKPPYVIPDQVHCAVIRYHSRRVTCLEFH
PTRNNILLSGDKKGQIGVWDFAKVYEKSVYGNIHSVQVNNMRFSPTNDDMVYSASSDGTI
GYTDLETGTSSTLLNLNPDGWQGPSSWKMLYGMDINSEKGVVLAGDNFGFLHMIDHRSNN
GMGEPILIHKLRNKHGSKVVGLDCNPVQPELLLSCGNDHFARIWDMRKLQPGASLNDLAH
KRVVNSAYFSPSSGTKILTTSQDNRIRIWDSIFGNLDLPSREIVHSHDFNRHLTPFKAEW
DPKDTSESLIVVGRYISENYNGAALHPIDFIDSSNGQLVAEVMDPNITTITPVNKLHPRD
DVLASGSSRSLFIWRPQEKTEMVEEKKDKKIMICYGDSKKKGKKQKRCSDDEDDDDDDMF
SSKGKSIKINKSQAKTTKSTRKTKT
NT seq
1698 nt
NT seq
+upstream
nt +downstream
nt
atgggtttaacgaggaacagaagaaaaacggacccagaaatcgtcattgctagagataca
gattccgagttaagttcggaggaagaggaagaagaagaagaagaagaaaattaccctttg
tcggagttggaggaagaagacgaagcggtcaaaaatggagggagaattgaattggagaag
aataaagcgaaagggaaagcacccattaccgttaagcttaagaaagtttgcaaagtctgt
aaacagcctggtcatgaagctggatttaaaggagcaacatatatcgattgtcctatgaaa
ccttgcttcttatgcaaaatgcctggccacaccacaatgtcatgcccccatagagtggtt
actgaccacggaatactcccaacttctcataggaatacaaagaaccctatagactttgtg
ttcaagcgtcaactccaatcgagaattccaccgattaaaccaccatatgtgatcccggat
caagtgcattgtgcagttattcgttaccacagtagacgtgttacgtgtttggagttccat
ccaacaaggaacaacattcttctctctggagataagaaagggcaaattggagtctgggat
tttgctaaagtgtatgagaagagtgtgtacggaaacatacactctgtacaagtgaataac
atgcggtttagtcccacaaatgatgacatggtttattctgcatcctctgatggaacgatt
ggttatactgacctggaaactggaacttcatcaactttgctgaatctcaaccccgatgga
tggcagggcccgagtagttggaaaatgttgtacggtatggatataaactcggagaaaggt
gtagtgcttgctggtgataattttgggtttcttcacatgattgaccaccgttctaataac
ggaatgggtgagccaattctgatacacaagcttagaaacaagcacggaagcaaagttgtt
ggccttgactgcaaccctgttcagcctgagcttcttctcagttgtgggaacgatcatttt
gcacgaatctgggatatgcgtaaactacaacctggagcttctcttaatgatcttgcacac
aaacgagtagtcaactctgcttatttctctccatcatcaggtacaaaaatcctcacgacg
tctcaggacaaccgtattcgaatatgggactctatctttgggaacttggatttgccaagc
cgagagattgttcatagccatgatttcaataggcatttgacgccattcaaagctgaatgg
gatcctaaggatacctcggagtcactcattgttgttggtcgttacattagtgaaaactac
aacggagctgctcttcacccaatagatttcattgattcaagcaatggacaactggttgca
gaggttatggatccaaacatcacaactattactccagtcaacaagttgcatccgcgggat
gatgttttagcttctggaagttcaaggtcgctgttcatctggcggccacaggagaaaaca
gagatggttgaggagaagaaggataagaagattatgatatgttatggtgacagtaagaag
aaaggaaagaaacaaaagcgttgcagcgatgatgaagatgacgatgacgacgacatgttt
agctcgaaaggcaaaagcattaaaatcaacaagtctcaagcaaaaacaaccaagtctact
cggaagacaaaaacttaa
DBGET
integrated database retrieval system