KEGG   Eutrema salsugineum (saltwater cress): EUTSA_v10013321mg
Entry
EUTSA_v10013321mg CDS       T02985                                 
Name
(RefSeq) hypothetical protein
  KO
K17890  autophagy-related protein 16-1
Organism
eus  Eutrema salsugineum (saltwater cress)
Pathway
eus04136  Autophagy - other
Brite
KEGG Orthology (KO) [BR:eus00001]
 09140 Cellular Processes
  09141 Transport and catabolism
   04136 Autophagy - other
    EUTSA_v10013321mg
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04131 Membrane trafficking [BR:eus04131]
    EUTSA_v10013321mg
   03029 Mitochondrial biogenesis [BR:eus03029]
    EUTSA_v10013321mg
Membrane trafficking [BR:eus04131]
 Autophagy
  Autophagosome formation proteins
   Atg12 conjugation proteins
    EUTSA_v10013321mg
 Others
  Specific organelles associated proteins
   Auto phagosome
    EUTSA_v10013321mg
Mitochondrial biogenesis [BR:eus03029]
 Mitochondrial quality control factors
  Mitophagy factors
   Autophagy-related proteins
    EUTSA_v10013321mg
SSDB
Motif
Pfam: WD40_Prp19 WD40 WD40_CDC20-Fz WD40_WDHD1_1st EIF3I Beta-prop_EML_2 Beta-prop_TEP1_2nd WDR55 WD40_MABP1-WDR62_2nd Beta-prop_WDR90_POC16_2nd Beta-prop_CAF1B_HIR1 ATG16 Beta-prop_EML WDR90_beta-prop_4th Beta-prop_WDR75_1st ANAPC4_WD40 Beta-prop_TEP1_C WD40_MABP1-WDR62_1st Beta-prop_IFT122_1st Beta-prop_SCAP Beta-prop_NWD2_C Beta-prop_RIG_2nd Beta-prop_IFT140_1st NBCH_WD40 Beta-prop_SPT8 Beta-prop_HPS5 WD40_RFWD3 Beta-prop_Nup120_160 Beta-prop_WDR19_1st Beta-prop_DCAF4 WDR54 Beta-prop_VPS8 Ge1_WD40 Beta-prop_EIPR1 Beta-prop_Vps41 PQQ_2 Beta-prop_DCAF12 B-prop_COPA_B_2nd Beta-prop_NUP159_NUP214 Cytochrom_D1 Beta-prop_RIG_1st Beta-prop_IP5PC_F V_ATPase_I WD_LRWD1 INO80E
Other DBs
NCBI-GeneID: 18017491
NCBI-ProteinID: XP_006402157
UniProt: V4L039
LinkDB
Position
Unknown
AA seq 502 aa
MEAIKDALRALRKRHLLEEGAHGPAISALSRPFISQGSEWKEKTEKLEIELQQCYKAQSR
LSEQLVIEVAESRLSKAALQEKEVLVNDLQNELTQTREELTQLQEEFEEKTKTLDLLIAE
NKEVRSQLEEMTARAQKAESENKMLIDRWMLQKMQDAERLNEANALYEEMLAKLRANGLE
NLARQQVDGIVRRNEDGTDHFVESIIPSTCGHRIHAHEGGCGSILFEYNSGTLFTGGQDR
AVKMWDTNSGSLIKSLHGSLGNILDLAITHDNKSLIAATSSNNLFVWDVNSGRVRHTLTG
HTDKVCAVDVSKFSSRHVVSAAYDRTIKLWDLLKGYCTNTVLFTSNCNAICLSIDGLTVF
SGHMDGNLRLWDIQTGKLLSEVAGHSSAVTSVSLSRNGNRILTSGRDNVHNVFDTRTLEI
CGTLRASGNRLASNWSRSCISPDDDYVAAGSADGTVHVWSISKGNIVSTLKEQTSPILCC
SWSGIGKPLASADKNGYVCTWT
NT seq 1509 nt   +upstreamnt  +downstreamnt
atggaagccataaaagacgctttgagagctctgaggaagcgtcatcttctcgaagaagga
gctcatggtcccgcgatttctgctctctctagaccttttatctctcaggggtcagaatgg
aaagagaaaaccgaaaaactggaaatagaactacagcaatgttacaaagcgcaatcaaga
ttgtctgaacaactcgtgatagaagtagctgaatcaagactttcaaaggctgctttacaa
gagaaggaggtgttagttaatgacctgcagaatgaactaacccaaacaagggaggagttg
acacagttacaagaagagtttgaggaaaagaccaagacgctggatttacttattgctgaa
aacaaggaagtccggtctcagctggaggagatgactgctagagcgcaaaaagcagagtct
gagaataagatgttaattgatcggtggatgttgcagaagatgcaggatgcagaacgttta
aatgaggcaaatgctctatatgaagaaatgctagctaagcttagggccaatggtttggaa
aatcttgctcggcagcaagttgatggcattgtccggcgcaatgaagatggaacagatcac
tttgttgagtcaattattccgtcaacatgtggacaccgtatccacgctcacgaaggtggc
tgtggttcaatactcttcgagtacaactctggtactctgtttaccggtgggcaagaccga
gcagtcaaaatgtgggacaccaacagtgggtctttaatcaaaagcctacacggctcactt
ggaaatatacttgatctagccataactcacgacaacaaatccctgatcgcagcaaccagc
tcgaacaatctgtttgtgtgggatgttaactcgggtagggttcgtcatactctcacaggt
cacacagataaagtttgtgctgtggatgtgagcaaattctctagccgacatgttgtcagt
gcagcttatgaccgaaccataaaactctgggatttgctgaaaggttactgcactaacacc
gtgctcttcaccagtaactgcaacgcaatctgtctcagcatagacgggcttacagtattc
tcaggccacatggatgggaatcttaggttatgggatattcaaactgggaaactcctgtct
gaagtagctggacattcttccgctgtgacctcggtatcattgtctcgtaatggaaatagg
atcttgacgagcgggagagacaacgtgcataacgtattcgatactcggactttggaaata
tgtgggacattgagagcatcagggaacagattggcatcgaattggagccggtcttgtata
agtccggatgatgattacgtggctgcgggatctgcagatgggacggtccatgtatggtct
atatctaagggcaatatagtgagcactctcaaggagcaaacatctcctatactgtgttgt
tcttggagtgggatcgggaaaccattggcatcagctgataaaaacgggtatgtttgcaca
tggacatga

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