Eutrema salsugineum (saltwater cress): EUTSA_v10013628mg
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Entry
EUTSA_v10013628mg CDS
T02985
Name
(RefSeq) hypothetical protein
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
eus
Eutrema salsugineum (saltwater cress)
Pathway
eus03013
Nucleocytoplasmic transport
eus03015
mRNA surveillance pathway
eus03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
eus00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
EUTSA_v10013628mg
09122 Translation
03013 Nucleocytoplasmic transport
EUTSA_v10013628mg
03015 mRNA surveillance pathway
EUTSA_v10013628mg
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
eus03019
]
EUTSA_v10013628mg
03041 Spliceosome [BR:
eus03041
]
EUTSA_v10013628mg
Enzymes [BR:
eus01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
EUTSA_v10013628mg
Messenger RNA biogenesis [BR:
eus03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
EUTSA_v10013628mg
Spliceosome [BR:
eus03041
]
Complex C
Other components
EJC/TREX
EUTSA_v10013628mg
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
EUTSA_v10013628mg
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
CMS1
YihI
DNA_repr_REX1B
Motif
Other DBs
NCBI-GeneID:
18019017
NCBI-ProteinID:
XP_006399618
UniProt:
V4N695
LinkDB
All DBs
Position
Unknown
AA seq
427 aa
AA seq
DB search
MGDARDNEAYEEELLDYEEEDEKIPDSGSKVNGEAVKKGYVGIHSSGFRDFLLKPELLRA
IVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQIEPSPGQVSALVL
CHTRELAYQICNEFVRFSTYLPDTKVSVFYGGVNIKIHRDLLKNECPHIVVGTPGRVLAL
AREKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPVC
KKFMQDPMEIYVDDEAKLTLHGLVQHYIKLNELEKNRKLNDLLDALDFNQVVIFVKSVNR
AKELNKLLVECNFPSICIHSGMSQEERLTHYKSFKEGHKRILVATDLVGRGIDIERVNIV
INYDMPDSADTYLHRVGRAGRFGTKGLAITFVASTSDSGVLNQVQERFEVDIKELPEQID
TSTYMPS
NT seq
1284 nt
NT seq
+upstream
nt +downstream
nt
atgggagacgctagagacaacgaagcctacgaggaggagcttctggactatgaggaagag
gacgagaagatcccagattctggaagtaaagttaacggcgaagccgttaagaaagggtac
gtgggaatacacagttcgggattcagagacttccttttgaaaccggagcttcttcgagct
attgttgactcgggatttgaacatccatccgaagtgcaacatgaatgtatccctcaagct
atcttgggcatggatgttatctgccaagcaaaatctggtatggggaagactgctgtgttt
gtgctttcgactctgcaacagatcgaaccatctcctggccaggtttcggcgcttgtcttg
tgccacacaagagagttagcttaccagatctgcaatgagttcgtgcgattcagtacctac
ctgcctgatacaaaggtttcggttttctatggtggagtcaacattaaaattcacagagac
ttgctgaagaatgaatgtcctcacattgttgttggaacacctggtcgggtgcttgcactt
gccagggaaaaagatctctctttgaagaatgtgaggcattttattctggacgagtgtgat
aaaatgcttgagtcacttgacatgcggagagatgtgcaagagatctttaagatgactccc
catgacaaacaagtgatgatgttctcagcaactctcagcaaagagatacgcccagtctgc
aagaagttcatgcaagatccaatggaaatatatgttgatgatgaagcgaaattgactctt
catgggcttgtccagcactacatcaaactgaatgagttggagaagaaccgtaagctgaat
gaccttcttgatgcattggactttaatcaagttgtcatatttgtgaagagcgtgaacaga
gctaaggagctgaacaaattgcttgttgaatgcaatttcccctcaatatgcattcactct
ggcatgtctcaggaagaaaggttgactcactacaaaagtttcaaggaagggcacaagaga
attcttgtggctacagatttggtaggaagaggcattgacattgagcgtgtcaacatcgtt
atcaactacgacatgccagattctgctgatacatatcttcacagggttgggagagccggt
aggtttggaactaagggtcttgcaatcacatttgttgcatctacttcagattcgggcgtt
ctcaatcaggtacaagagaggttcgaggttgatataaaggaactccctgagcagattgat
acttccacatacatgccgtcttaa
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integrated database retrieval system
