Eutrema salsugineum (saltwater cress): EUTSA_v10016061mg
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Entry
EUTSA_v10016061mg CDS
T02985
Name
(RefSeq) hypothetical protein
KO
K12820
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15/PRP43 [EC:
5.6.2.6
]
Organism
eus
Eutrema salsugineum (saltwater cress)
Pathway
eus03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
eus00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
EUTSA_v10016061mg
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
eus03041
]
EUTSA_v10016061mg
03009 Ribosome biogenesis [BR:
eus03009
]
EUTSA_v10016061mg
Enzymes [BR:
eus01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
EUTSA_v10016061mg
Spliceosome [BR:
eus03041
]
Complex A
U2 snRNP components
U2 related factors
EUTSA_v10016061mg
Complex B
EUTSA_v10016061mg
Complex C
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-SnRNP related factors
EUTSA_v10016061mg
Ribosome biogenesis [BR:
eus03009
]
Eukaryotic type
90S particles
Helicases
EUTSA_v10016061mg
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Helicase_C
HA2_N
DEAD
AAA_22
AAA_19
ABC_tran
nSTAND3
ResIII
AAA_7
SRP54
NACHT
FtsK_SpoIIIE
T2SSE
ATPase
AAA_30
TsaE
AAA_29
PhoH
Zeta_toxin
DUF6668
Motif
Other DBs
NCBI-GeneID:
18018227
NCBI-ProteinID:
XP_006400007
UniProt:
V4KU17
LinkDB
All DBs
Position
Unknown
AA seq
467 aa
AA seq
DB search
MDMMMKKATYSKRYFEILEKRRNLPVWLQKQEFLQTFKKNQTVILVGETGSGKTTQIPQF
VLEAVLDENPNPNPSGRKWLVGCTQPRRVAATSVSRRVAEEMDVQIGEEVGYTVRFEDCT
SSRTVLKYLTDGMLLREAMADPLLSRYKAIVLDEAHERTLATDLLVGLLKQVLMNRPDIK
LVVMSATLETNKFREYFLGAPLIKVPGRLHPVEILYTLEPEMDYLEAAINTVIQIHMCEP
PGDVLLFLTGEEEIEEASSRIAGKLGDQVRVVPLYSTLPPALQQKIFDPTPDHVRKIVVS
TNIAETSLTIDGIVYVVDPGFSKQKIYNPSTRAESLLVSPISQPSADQRAGRAGRTRPGK
CFRLYTQRSFNDLEEKTVPEMLRSNLANTVLTLTKLGVNLVRFDFMDPPAPQTLSRALED
LYHLGALDDECNLTKTGEMMSEFPLDPQMAKMLIVSPQFKLLKRDTF
NT seq
1402 nt
NT seq
+upstream
nt +downstream
nt
atggatatgatgatgaagaaggcgacgtattctaagaggtatttcgagattctggagaaa
cggaggaacctgccggtgtggttgcagaaacaagagtttctccaaactttcaagaaaaac
cagacggtgatattggtcggtgagaccgggagtgggaaaaccacgcagatcccacagttt
gttttagaagcagtgctcgacgaaaaccctaaccctaatccaagtgggaggaagtggttg
gttgggtgcacacagcctcgtagagttgcagcgacgtctgtgtcccgtcgtgttgctgaa
gagatggatgttcagatcggtgaagaagtcggttacaccgtccgtttcgaagattgcacc
agctcccgaacggtgctcaagtacctgaccgatggtatgcttctaagagaagcaatggcg
gatccactcttatcgagatacaaggcgattgttctcgacgaggcacacgaaagaacttta
gccacagatttgcttgttggtcttcttaaacaagtcttgatgaatcgacctgatatcaag
ctggtcgtgatgagtgcaaccctagaaaccaacaagtttcgcgagtactttctcggtgct
cctctgatcaaagttcccggtcggcttcatccagtggagatcttgtacactttagaacct
gagatggattatcttgaggctgctataaacactgtgatccagattcacatgtgtgagcca
ccaggtgatgttcttcttttcttaacgggagaagaagagattgaagaggctagcagcaga
attgccggtaaacttggagatcaagtcagagttgtgccattgtattccactcttccgcct
gccttgcaacagaagatattcgatcctacaccagatcacgtgaggaagattgttgtctcc
accaacattgcggagacttcgttgaccattgacgggattgtttacgtggtcgatcctggt
ttctccaagcagaaaatctacaacccaagcactcgtgccgagtccttgttagtgtctcca
atatcacagccaagtgctgaccagagagcaggtcgtgctggtagaacaaggcctggaaaa
tgtttcaggctttacacacagagaagtttcaatgacttggaggagaagacggtccctgag
atgttgagatcaaaccttgcaaatacagttctgaccttgacaaaacttggtgttaacttg
gttagattcgattttatggatcctcctgctcctcagaccctctctcgtgccttggaggat
ttgtatcatttaggagcattggatgatgaatgtaacttgacaaagacaggcgagatgatg
agtgagtttcccttagacccacagatggcgaagatgctcatagtcagtcctcaattcaaa
ctgctcaaacgagatactttcg
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