Eutrema salsugineum (saltwater cress): EUTSA_v10016152mg Help Entry EUTSA_v10016152mg CDS       T02985                                  Name (RefSeq) hypothetical protein   KO K14442   ATP-dependent RNA helicase DHX36 [EC:5.6.2.6] Organism eus  Eutrema salsugineum (saltwater cress) Pathway eus03018   RNA degradation Brite KEGG Orthology (KO) [BR:eus00001]  09120 Genetic Information Processing   09123 Folding, sorting and degradation    03018 RNA degradation     EUTSA_v10016152mg  09180 Brite Hierarchies   09182 Protein families: genetic information processing    03019 Messenger RNA biogenesis [BR:eus03019]     EUTSA_v10016152mg Enzymes [BR:eus01000]  5. Isomerases   5.6  Isomerases altering macromolecular conformation    5.6.2  Enzymes altering nucleic acid conformation     5.6.2.6  RNA 3'-5' helicase      EUTSA_v10016152mg Messenger RNA biogenesis [BR:eus03019]  Eukaryotic type   mRNA degradation factors    3'-5' decay     Other 3'-5' decay factors      EUTSA_v10016152mg BRITE hierarchy SSDB OrthologParalogGFIT Motif Pfam:  OB_NTP_bind DEAD Helicase_C R3H HA2_C AAA_22 HA2_N Ank_5 nSTAND3 AAA_19 Ank_2 ATPase AAA_7 Sigma54_activat Rad17 T2SSE Ank AAA_11 Ank_4 AAA_16 Motif Other DBs NCBI-GeneID:  18026949 NCBI-ProteinID:  XP_006410180 UniProt:  V4MGG7 LinkDB All DBs Position Unknown AA seq 1305 aa AA seqDB search MGNKRFRSETAGKPTSVEATRIWASKVIEDFRASGNEVYTFEHNLSNSERGVIHQMCRKM GIQSKSAGRGDQRRLSIFKSKHRNGKNKESMKKSNREKLKCVSFPPEADAILQELFTHYP PCDGDTAATSFNKYSGKSGKQGQWKDDFFRKPQISGDEILEKVASLSSRLRKDKALQEIS KLRSKLPITSFRDAITSAVESNQVILISGETGCGKTTQVPQYLLEHMWSSKRETCKIVCT QPRRISAMSVSERISCERGESIGDNIGYKVRLQSKGGRHSSVVFCTNGILLRVLVGKGSV SCVSDITHIIVDEIHERDCYSDFMLAIIRDLLPSNPHLRLILMSATLDAERFSGYFGGCP VVRVPGFTYPVRTLYLEDVLSILKSGGDNHLSSANLSIPDQKLDLTNEDKLALDEAITLA WTNDEFDALLDLVSSRGSPEIYNYQQKSTLLTPLMVFAGKGRISDVCMLLSFGADWNLKS KDGMTALELAETESQLEAAQIIREHVGNSHSQQAQQLLDKYMATINPEQVDVSLIQQLMR KICGDSEDGAILVFLPGWDDINKTRQKLLDNPYFADSTKFDIICLHSMVPAGEQKKVFNR PPRGCRKIVLATNIAESAVTIDDVVYVIDSGRMKEKSYDPYNNVSTLQSSWVSKANAKQR EGRAGRCQPGICYHLYSRLRAASMPEFKVPEIKRMPVEELCLQVKILDPNCKTNDFLQKL LDPPVDQSIANALSILQDIGALTPEEELTELGEKFGHLPVHPLICKMLFFAVLVNCLDPA LTLACAADYKEPFTMPMSPVERQKAAAAKLELASLCGGDSDHLAVVAAFECWRNAKERGL SAEFCSQYFVSPSAMKMLDQMRSQLESELKRHGIIPGDITSCSQNSRDPGILRAVLAVGL YPMVGRLCPSFGNNRRSIVETASGAKVRVHSLSNNFNLSSRKYDESLVVFDEITRGDGGM HIRNCTVARDLPLLLVSTEIAVAPTGSSDADDSDDEEEEEEEDEETGEEEEEEGDNINED GMDIHKAESRRGQKMMSSPENSVKLVVDRWLPFKTTALEVAQMYILRERLTASILFKVRH PRENLPPHLGASMYAIACLLSYDGHAGLSSPPASMGPKQSRNEMYDNGGWEEKPNSFLNS LFWSLSLKENEPSSRHASRNRQHGFNTAPTEAASMPRQQNIKQRKPKSANVADLGKHKEK MFVNHINGIHQPEAASTAKQSKHKSANSAGNKKENMPSDKVFGNQQPNTAPREAAASVAK HQSSKKSKTKSANNSDPGKKKDRYVPKIDLHKRQREDKQEQKGNA NT seq 3918 nt NT seq  +upstreamnt  +downstreamnt atggggaacaagaggttcaggtctgaaactgctgggaagcctacttccgtcgaagctact aggatttgggcctccaaggtcatcgaagacttccgagcctccggtaacgaagtttacacg tttgagcataatctttcaaatagcgaacgtggagtaattcatcagatgtgccggaaaatg ggtattcaatcgaaaagtgccgggcgtggggatcaaaggcgtctttcgatattcaaaagc aagcacagaaatggaaagaacaaagagtctatgaagaaatcaaatagagagaagctcaaa tgtgtctcgttcccgccagaggctgatgctattctgcaggagttatttactcactaccca ccttgtgatggagatactgctgcaacatcgttcaataagtactcagggaaatccggtaaa caagggcaatggaaagatgattttttccggaagccacagattagcggtgacgagatcctt gaaaaggtggcatctttgagttctaggcttaggaaggataaagcgcttcaggagatctct aagctgcggtcaaagcttcccatcacatcttttagagatgcaattacatctgcagtagaa tccaatcaggttattctcatttctggtgaaactggttgcgggaaaactactcaggttcct caatatcttttagaacatatgtggtcaagcaaaagagaaacttgcaaaattgtttgcacc caacctcgtcgtatctccgccatgtcagtttctgaaagaatatcctgtgaaagaggtgaa agcattggagacaacattggttacaaggttcgactacaaagcaaaggtggaaggcactca tcagttgttttctgcaccaatggcattcttctgagggtgctcgtaggcaaaggctctgtt agctgtgtttccgacataactcacatcattgtggatgaaatccatgaaagggattgctac tccgatttcatgttggcaattataagggacttgcttccatctaatccgcatcttcgtctg attctaatgagtgctacacttgatgctgagagattttcgggatattttggaggttgcccg gttgtccgtgtccctggattcacttatccagtaagaaccttgtatttggaagatgtgctc tctattctgaaatcaggtggagataatcatctaagctctgccaacttgagtataccagac cagaagcttgatttgacgaatgaagataaacttgctttagatgaagcaatcaccttggct tggacaaatgatgagttcgatgccctcttagatctagtttcttctcgaggaagtcccgag atctacaattatcagcagaaatcaaccttgctaacaccactaatggtctttgctggaaag ggaaggatcagcgatgtctgcatgctcctctcgtttggtgcagactggaacttaaagtct aaagatggtatgacagcattagaattggctgaaacagagagtcaactagaagctgctcaa ataatcagggagcatgtaggaaattcgcattctcagcaagcacaacagttacttgataag tacatggcgacaatcaacccagagcaagtagatgtgagtcttatacagcagttgatgagg aaaatatgtggtgattcagaagatggtgccattcttgtttttctaccgggatgggatgac ataaacaaaacaagacagaagttacttgataacccttatttcgcagatagtaccaaattc gacattatatgtcttcactcaatggttcctgcaggggaacagaagaaagtttttaatcgt cctcctcgaggttgtcgcaaaatcgtgcttgccacaaatattgctgaatcagcagttacc attgatgatgtggtttatgtgatagatagtggcaggatgaaggaaaagagctatgatcct tacaataatgtttcaaccctccagtcttcctgggtttcaaaagcaaatgcaaaacagcgt gagggtcgagcaggtcgttgccagcctggcatctgttaccatctctattctagacttcgg gcagcctctatgccagaatttaaagttcctgaaattaagaggatgcctgtcgaagaacta tgcttgcaggttaagatactcgatccaaattgtaaaacaaatgatttccttcagaagttg ttggacccgcctgttgatcaaagtatcgcaaatgccttgagcatcctacaggacatcggg gcactgacacccgaggaagagctgacagaacttggagagaaatttggtcatctcccagtt catcctctgatatgcaaaatgcttttcttcgctgtattagtaaactgtctggatccagca ctcactctggcatgtgcagctgactacaaggaaccgtttaccatgcctatgtcgccagtt gaaagacagaaagctgctgctgcaaaacttgaacttgcgtctctctgtggaggtgacagt gatcacctagcagttgttgctgcgtttgagtgttggagaaacgcaaaagaaagaggtctt tcggcagagttttgctctcagtactttgtttccccaagtgctatgaagatgttggatcaa atgcgtagccaacttgagtcagaactaaaaagacacgggattattcctggtgacatcaca agttgtagccagaattcgcgtgatcctggtatactccgtgctgtcctagcggtaggattg tatcctatggtgggaagattgtgcccgtcgtttggtaataatcgaagatctatagtagag actgctagtggtgctaaagttcgtgtgcattcgctctcaaacaacttcaacttgtcgtcg aggaagtatgatgaatctttagttgttttcgatgagatcacacgtggagatggaggcatg cacataagaaactgtactgttgctcgcgatcttcctttattactggtctcaacagagata gctgtagctcctacagggagcagtgatgctgatgatagtgatgacgaggaagaagaagaa gaagaagatgaagaaacaggagaagaagaagaagaagagggagataatattaatgaagac gggatggatatacataaagcagagagtaggcgtggacagaaaatgatgtcttcacctgaa aattcagtcaagttggtagttgatcgatggctgcctttcaaaaccacagccctcgaagtt gctcaaatgtacattttgagggagcgactaacagcatccattctgttcaaggtaagacat ccacgggaaaatttgccgcctcatctcggagcttctatgtatgcaatagcttgccttctc tcatatgatggtcacgcgggactttcatctccaccggcgtctatggggccaaaacaatca aggaatgagatgtatgataacggaggatgggaagagaaaccaaattctttcctcaactcg ctcttttggtctctgagtctgaaagagaacgagccttcttctagacacgcgagtaggaat cgacagcatggcttcaacacggctccaacagaagctgcatcaatgcctaggcagcaaaac atcaagcaaagaaagccgaaatcagccaacgttgctgatttgggtaagcataaagagaaa atgtttgttaatcacatcaatgggatccaccaaccggaagctgcatctactgctaagcag tcaaagcacaaatcagccaacagtgcgggtaacaagaaagagaacatgccttctgataag gtttttgggaatcagcaaccaaacacagctccaagagaagctgctgcatcagtggctaag catcaaagcagtaagaaatccaagaccaagtcagccaacaactcggatccgggtaagaag aaagaccggtatgttccaaagatagatcttcataaaaggcaacgcgaagacaaacaagaa cagaagggaaatgcatga

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