Eutrema salsugineum (saltwater cress): EUTSA_v10016457mg
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Entry
EUTSA_v10016457mg CDS
T02985
Name
(RefSeq) hypothetical protein
KO
K12662
U4/U6 small nuclear ribonucleoprotein PRP4
Organism
eus
Eutrema salsugineum (saltwater cress)
Pathway
eus03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
eus00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
EUTSA_v10016457mg
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
eus03041
]
EUTSA_v10016457mg
Spliceosome [BR:
eus03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6 snRNP specific factors
EUTSA_v10016457mg
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
WD40_Prp19
WD40
WD40_WDHD1_1st
Beta-prop_EML_2
WD40_CDC20-Fz
EIF3I
Beta-prop_CAF1B_HIR1
WD40_MABP1-WDR62_2nd
WDR55
Beta-prop_TEP1_2nd
WD40_MABP1-WDR62_1st
Beta-prop_WDR90_POC16_2nd
Beta-prop_TEP1_C
Beta-prop_IFT122_1st
Beta-prop_EML
NBCH_WD40
PRP4
WDR90_beta-prop_4th
Beta-prop_WDR75_1st
Beta-prop_WDR19_1st
ANAPC4_WD40
Beta-prop_EIPR1
Beta-prop_SCAP
Beta-prop_DCAF4
WD_LRWD1
Beta-prop_Vps41
eIF2A
Beta-prop_SPT8
WD40_like
Motif
Other DBs
NCBI-GeneID:
18026474
NCBI-ProteinID:
XP_006411417
UniProt:
V4LQI9
LinkDB
All DBs
Position
Unknown
AA seq
560 aa
AA seq
DB search
MELNKDDNVSLAPTASVPIAQITAAPILQDASSQLGVAAIPHVVPPSFPPPMAPIPMAPP
PAARPPTFRPPISQNGGEKSSDSDSDSEDEHYEISEESRQVRERREKALKDMQIKRHAAA
IAVPTNDKAVRDRLRRLGQPITLFGEQEMERRARLSQLMARLSIDGQLDKLFRAHEEDAA
PKEEVDDEVLEYPFFTEGPKELREARIEIAKFSIKRAAVRIQRAKRRRDDPDEDMDAETK
WALNHAKGMVLDCSNFGDDRPLTGCSFSRDGKILATCSLSGVTKLWEMPQVTNKIAVLKD
HKERATDVVFSPVDDCLATASADRTAKLWKTDGTLLQTFEGHLDRLARVAFHPSGKYLGT
TSFDKTWRLWDVNTGAELLLQEGHSRSVYGIAFQQDGALAASSGLDSLARVWDLRTGRSI
LVFQGHIKPVLSVNFSPNGYHLASGGEDNQCRIWDLRMRKSLYIIPAHANLVSQVKYEPQ
EGYFLATASYDMKVNIWSGRDFSLVKSLAGHESKVASLDIAADSSCIATVSHDRTIKLWT
SSTSEEDQEDQGGDTMDIDL
NT seq
1683 nt
NT seq
+upstream
nt +downstream
nt
atggaactcaacaaggacgataatgtttcattggcaccaacagcttcagttcctatagct
caaatcacagcagctccaattctacaagatgcctcatctcagctaggcgtcgccgccata
ccacatgtggttcctccttcttttcctccaccaatggctccgataccaatggctccacct
ccagctgcccgtccacctacttttaggccacctatttcacaaaatggtggagaaaaatcc
agtgactcggattcagattcagaggatgaacattatgagatatctgaagagagtaggcag
gtcagagaaagacgagaaaaggcactgaaagacatgcagataaaacgtcatgctgctgct
atcgcagttccaacgaatgacaaagctgttagagatcgcctcagacgacttggacagccc
attactctatttggagaacaggaaatggagcgaagagctaggttgtctcagcttatggct
aggcttagtatcgatggccagttggataaactttttagagctcacgaagaagatgccgct
ccaaaagaggaagtggatgatgaagtacttgaatacccattttttactgagggtccaaag
gaacttagagaggctagaattgaaattgccaaattttctatcaagagagctgctgtcagg
attcagcgtgcaaagcggcgaagagatgatccagatgaagatatggatgcagagactaag
tgggctttgaatcatgctaaaggcatggtccttgattgcagtaattttggggatgatcgt
cctcttaccggctgctccttctcacgcgatgggaaaatacttgccacatgttctctgagt
ggagttacaaaattgtgggaaatgcctcaagttacaaacaagattgctgtcctgaaggat
cacaaagaacgtgcaactgatgtagtgttctcccctgtggatgattgtctggcaactgct
tctgctgatcgaactgcaaagttgtggaaaactgatggaacactcctacaaacttttgaa
ggtcatctggatcgtcttgcacgcgttgccttccacccatcagggaagtacctcggaaca
acaagctttgacaaaacatggagactgtgggatgtaaacactggagcagagctgcttttg
caagaaggtcatagtcgtagtgtctatggaattgcatttcaacaagatggagcattagca
gcttcttctgggcttgattcactcgcacgggtttgggatctccgcactggtaggagtatt
ctcgtcttccaaggacacattaaaccggttctctcagtgaatttctctcctaatggttat
cacttggcatcgggtggtgaggataatcaatgccgtatttgggatctaagaatgagaaag
tcattgtacattataccagctcatgctaaccttgtgtctcaagtgaagtatgaaccacaa
gaaggctacttcctagccactgcctcatacgacatgaaagtcaatatatggtcaggcaga
gatttctcacttgttaaaagcttagcaggacacgagtcaaaagtcgcctctctagatatc
gctgcagatagctcctgtatcgctactgtatcacatgaccgcaccatcaagctttggaca
agcagtaccagcgaagaagaccaagaagaccaaggcggagacacaatggacatagatctc
tag
DBGET
integrated database retrieval system