Eutrema salsugineum (saltwater cress): EUTSA_v10017881mg
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Entry
EUTSA_v10017881mg CDS
T02985
Name
(RefSeq) hypothetical protein
KO
K12813
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16 [EC:
5.6.2.6
]
Organism
eus
Eutrema salsugineum (saltwater cress)
Pathway
eus03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
eus00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
EUTSA_v10017881mg
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
eus03041
]
EUTSA_v10017881mg
Enzymes [BR:
eus01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
EUTSA_v10017881mg
Spliceosome [BR:
eus03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
EUTSA_v10017881mg
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
Helicase_C
WHD_HA2
HA2_C
DEAD
AAA_22
AAA_19
AAA_30
nSTAND3
SRP54
PWI
Flavi_DEAD
nSTAND_NTPase5
AAA_7
AAA_16
Motif
Other DBs
NCBI-GeneID:
18027080
NCBI-ProteinID:
XP_006410692
UniProt:
V4LNM0
LinkDB
All DBs
Position
Unknown
AA seq
1045 aa
AA seq
DB search
MTSNDLNTWVSDKLMVLLGYSQTAVVKYLIALAKKSKSPDDLVRELVDYGFPSSGDTRAF
AEEIYARAPRKTAGVNLYQQQEAEAAMLLRKQEALSLLEADHDEDEGNVEKQSSLESRPS
DRRKKRFRKKIVQQEDDDNEVVIVREAERNVRRRVSDGEDDGIESEEERLRDQREREELE
QHLRERDTAQTRKLTEPKMSKKEREEGVRRDSAVEKGDMESLRKFSRQEYLKKREQKKLE
ELKDELEDEEYLFGDEKLTETELNEFRYKKEIYELLVNKSTQEADNIGEYRMPDAYDQEG
GVDQEKRFAVSLQRYRDMDSAEKMNPFAEQEAWEDHQIGKATLKFGAKNKQASDNYGFLF
EDQIEFIKASVLAGDNYEDEMHAKPYQDSTGKSALDMLQEERKSLPIYSYRDELLKAVKD
HQVLIIVGETGSGKTTQIPQYLHEAGYTKHGKVGCTQPRRVAAMSVSARVAQEMGVKLGH
EVGYSIRFEDCTSEKTILKYMTDGMLLRELLGEPDLSSYSVIIVDEAHERTLHTDILFGL
VKDIARARPDLKLLISSATMDAQKFSEFFDQAPIFMFPGRRYPVDICYTTAPEADYMDAA
ITAVLQIHVGEPLGDVLVFLPGQEEIETMEENLKQRIRGFGTKISELIICPIYGNLPSEL
QAKIFEPTPEGARKVVLATNIAETSLTIDGIKYVVDPGFSKLKSYNPRTGMESLLVTPIS
KASATQRTGRAGRTSPGKCFRLYTAYNYHNDLEENTMPEIQRTNLASVVLALKSLGINNL
LNFDFMDPPPSEALIKALELLFALGALNQLGELTKVGRRMAEFPLDPMLSKMIVVSDKYK
CSDEIISIAAMLSIGPSIFYRPKDKKVHADNAMMNFHVGNVGDHIALLKIYTSWKETNYS
TQWCCENYIQVRSMKRARDIRDQLEGLLERVEIEISSNSNDLDSIRKCIVAGFFPHTAKL
QKNGSYRTVKHPQTVHIHPASGLSQVLPRWVVYHELVLTSKEYMRQVTELKPEWLIEIAP
HYYQLKDVEDAKSKNMPKTSGRAAM
NT seq
3138 nt
NT seq
+upstream
nt +downstream
nt
atgacgagcaatgatttgaacacctgggtttcggacaagttgatggttctgcttggctat
tcacaaactgctgtcgtgaagtatctaattgcattggccaaaaaatcaaaatcaccagat
gatctcgtgcgtgagttggtagattacgggtttccttcgtcgggtgatactcgtgctttt
gcagaagaaatctatgctagagctccccggaaaaccgctggtgtgaatctctaccagcaa
caagaagcagaggcagcgatgctgttgaggaagcaagaagctctatcccttttagaggct
gatcatgatgaagatgaaggaaatgtggagaagcaatcttctctggagtccagaccgtct
gatagaagaaaaaaaaggtttaggaagaagattgttcaacaggaagacgacgataatgag
gtggtgattgtaagagaggccgaaaggaatgttaggagaagggtttccgatggcgaggat
gatggcattgagtctgaagaggagagattacgtgaccaaagggagagagaagaactagag
cagcacctaagagaacgtgatactgcacagacaagaaagctaacagaaccaaaaatgtca
aagaaagagcgagaagagggtgttcgaagagacagtgctgtagagaagggtgatatggag
tccctaaggaaattctcgcggcaagaatatttgaagaaaagggaacagaagaaattggaa
gagctaaaggatgaattagaagatgaagaatatcttttcggagatgaaaagctcaccgaa
acagaacttaatgaatttagatacaagaaagaaatatatgagctcctcgtgaataaaagt
acacaagaagcagacaatataggagagtataggatgccagatgcatatgatcaagaaggt
ggcgttgatcaagagaaaagatttgctgtttctttacaacgttacagggacatggattcg
gcggagaaaatgaacccctttgcagagcaagaagcttgggaggaccatcagattggaaag
gcaacattaaaatttggtgcaaagaataagcaagcctcagacaattatgggtttctattc
gaggaccaaatagaattcataaaagcatccgtcttggctggtgataattatgaagacgag
atgcatgctaaaccatatcaagattctaccggcaaatcggctctcgatatgcttcaggag
gagagaaaatctctgcccatttattcatatcgtgacgaacttcttaaagctgtgaaagat
catcaggttcttatcattgttggggaaacgggttcagggaagactacacagataccccaa
tatcttcacgaagctggttacaccaagcatggaaaggtcggttgcacgcagcctcgacga
gttgcggctatgagtgtgtctgctcgtgttgctcaagagatgggtgtcaaacttgggcac
gaggttggctattccattcgatttgaggattgtacttctgagaagacaattcttaagtat
atgactgatggaatgctattgcgtgagctgcttggtgagccagatctaagcagttacagt
gttattatcgttgatgaggcgcatgaaagaactctgcacaccgacatactatttggatta
gttaaggatatagcacgggctcgacctgatctgaagttattgatatccagtgcaaccatg
gatgctcagaagttttctgagttttttgaccaagccccgatattcatgttcccaggaaga
aggtatccagttgacatttgctatactactgctcctgaagcggattacatggacgcagca
attactgctgtgcttcagatacatgtgggagagccacttggggatgttttggtcttcctc
ccaggtcaagaggaaattgagaccatggaagaaaacttgaagcagaggattagaggtttc
ggtacaaagatcagcgaactcattatctgtccgatttacggtaaccttccaagcgaactc
caggcaaagatatttgaaccaactcctgaaggcgcacggaaagtggtcctagcaacaaat
attgctgaaacatcattgaccatcgacggtataaagtatgttgttgatccaggtttcagc
aagctaaagtcgtataaccctagaacggggatggaatctttgcttgtaacgcctatctct
aaggcttcagcgactcaacgaactggtcgagctggaagaacaagtccagggaagtgtttc
cgtttgtacacggcatacaattaccacaatgacttagaggaaaatacgatgcctgaaata
cagaggacgaatcttgctagtgtggtgctggctttgaagagccttggtattaataatctg
ttgaactttgacttcatggaccctccaccttcggaagctcttataaaggccttagagctg
ctatttgctctaggtgcactgaatcagcttggcgaattgactaaagttggtagaagaatg
gcagagtttccacttgatccgatgttgtcgaagatgatagttgtttctgacaagtacaaa
tgctctgatgagatcatctcaattgctgctatgttgtccatcggtccttctatcttttac
cgtcccaaggacaagaaggttcatgctgacaatgcaatgatgaactttcatgtcggaaat
gtcggtgatcacattgctttgctcaagatttacacttcgtggaaagaaacgaactactca
acccaatggtgctgcgagaactatattcaggttcggagcatgaaaagagccagagacatt
cgtgatcagttggagggtcttctcgaaagagttgaaatcgaaatcagctcaaactccaat
gatttggattcaataagaaagtgcatcgtagctggtttctttccacacaccgcaaagcta
cagaagaatggatcatatagaacagtgaagcatccccaaactgtgcacatacatccagcc
tctggcttatctcaggtattgccgaggtgggttgtatatcatgaactagtcctcacctct
aaggaatacatgcgacaggtaacagagttaaaaccagagtggttgattgagatagctcca
cactattatcagctcaaggacgttgaagatgctaaatccaagaatatgcccaaaaccagt
ggccgagctgcgatgtag
DBGET
integrated database retrieval system
