KEGG   Eutrema salsugineum (saltwater cress): EUTSA_v10018001mg
Entry
EUTSA_v10018001mg CDS       T02985                                 
Name
(RefSeq) hypothetical protein
  KO
K11292  transcription elongation factor SPT6
Organism
eus  Eutrema salsugineum (saltwater cress)
Brite
KEGG Orthology (KO) [BR:eus00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:eus03021]
    EUTSA_v10018001mg
   03036 Chromosome and associated proteins [BR:eus03036]
    EUTSA_v10018001mg
Transcription machinery [BR:eus03021]
 Eukaryotic type
  RNA polymerase II system
   Other transcription-related factors
    Transcription elongation factors
     EUTSA_v10018001mg
Chromosome and associated proteins [BR:eus03036]
 Eukaryotic type
  Nucleosome assembly factors
   Histone chaperones
    Other Histone chaperones and regulators
     EUTSA_v10018001mg
SSDB
Motif
Pfam: SH2_2 HHH_7 YqgF SPT6_acidic Tex_central_region Spt6_S1 HHH_9 HTH_44 HHH_3 SH2 Tex_N
Other DBs
NCBI-GeneID: 18008553
NCBI-ProteinID: XP_006391558
UniProt: V4KCI9
LinkDB
Position
Unknown
AA seq 1658 aa
MGRNTHSDEEDDHELEDEDVEPAHGDPVDNNDNDDDDEEDEGEDEYENDGFIVGDEEEEE
EEEEEEEKQDSDEERQKKKKRRRKKDEDLDEDDYLLLQDNNVKLQKRKYKRLKKAQRERE
NGQGGSSDDELDGSGGAGRSAEDKIKDNLFDDVDDLPDDVGDEDDLAVEEDVVGSEDEMA
DFIVDEDGNGHPRRGDAKKKKYRQGSDFSAIRDANEIFGDVDEFLLIRKKGLASSERMER
RLEDEFEPTVLSEKYMTGKDDEIRQLDIPERMQISEESTGSPPVDEISIEEESNWIYAQL
ISLIKDSDGQGLQTFEGQGFSVNKDDIAKFLELHHVQKLEIPFISMYRKEQCRSLLDSAD
VDDLNIEKKPETKWHKVFWMIQDLDRKWLLLRKRKMALHGYYTKRFEEESRRVYDETRLN
LNQYLFESIIKSLKVAETEREVDDVDSKFNLHFPAGEIGIDEGQFKRPKRKSQYSICSKA
GLWEVANKFGYSAEQLGLALSLEKLVDELEDAKETPEDMALNFVCAMFENPQAVLKGARH
MAAVEISCEPSVKKYVRGIYMENAVVSTSPTADGNGVIDPFHEYSGVKWLREKPLSKFEG
AQWLLIQKAEEEKLLQVTFKLPENYMNRLISDCNEHYLSVGVSKYAQLWNEQRKLILEDA
LHAFILPSMEKEARSLLTSRAKTRLLSEYGQALWNKVSAGPYQKKEMDINSDEEAAPRVM
ACCWGPGKPPNTFVMLDSSGEVLDVLYAGSLTLRSQNVNDQQRKKSDQDRVLKFMMDHQP
HVVALGAVNLSCTRLKDDIYEVIFQMVEEKPRDVGHGMDDLTIVYVDESLPRLFENSRIS
GEQLPQQSGIVKRAVALGRYLQNPLAMVATLCGPGREILSWKLHPLENFLQVDEKYGMVE
QVMVDITNQVGIDINLAASHEWFFSPLQFISGLGPRKAASLQRSLVRAGSIFVRKDLIIH
GLGKKVFVNAAGFLRIRRSGLAASSSQFIDLLDDTRIHPESYGLAQELAKDIYDQDVRGD
SNDDEDAIEMAIEHVRDRPASLRKVVLDEYLASKKRENKKETYSNIMRELSCGFQDWRIP
FKDPSPEEEFFMISGETEDTIAEGRIVQATVRRLQGGRAICVLDSGLTGMLMKEDFADDG
RDIVELSDRLKEGEILTCKIKSIKKERYQVFLICKESEMRNNRHQQNQNLDPYYHEDRNS
LLIEKEKARKEKELVRKHFKSRMIVHPRFQNITADQATEYLSDKDFGESIVRPSSRGLNY
LTLTLKIYDGVYAHKEIIEGGKENKDITSLQCIGKTLKIGEDTFEDLDEVMDRYVDPLVS
HLKTMLKYRKFRKGTKAEVDELLRIEKGENPARIVYCFGISHEHPGTFILSYIRSTNPHH
EYIGLYPKGFKFRKRMFEDIDRLVSYFQRHIDDPLQETVPSIRSVAAMVPMRSPADRGSS
GGGGWGGSQSEGGWKGNSDRSSGPRPGRGGEYRNGGGRGDGHASGAPRPFGGRGRGKGSE
RRDGNVEWGSHGGGGAGGRGAVGVVGEVSLVVKRVTVQVVGLVSLVVAAAGVGETILAVK
RVARMVVGEAVLVLVPAVGETSLVGKRAVKMAVGETSLVVKRAMETAVGEGIPADERVVV
AAAAAVDGEKTNALVVISFSLNDFLFMLLLLSYNLMVN
NT seq 4977 nt   +upstreamnt  +downstreamnt
atgggaagaaacacacattctgacgaagaagatgatcatgagctcgaagacgaggatgtt
gagccggctcatggagatccagttgataacaatgacaacgacgatgatgatgaagaggac
gaaggtgaggatgagtatgagaatgatggattcatagtgggtgatgaagaagaagaagag
gaggaagaagaggaagaagaaaagcaagatagcgatgaggagaggcagaaaaagaaaaag
agacgaaggaaaaaggacgaagatcttgatgaagatgattatcttcttcttcaagataac
aatgtcaaactccaaaagaggaagtacaagaggttgaaaaaagctcaaagggaaagggaa
aatggtcaagggggatcatcggatgatgaacttgatgggagtggtggagctggaagaagt
gctgaggacaagatcaaagacaatctgtttgatgatgttgatgatctgcctgatgatgta
ggcgatgaggacgacttagctgtggaagaagatgttgtcgggagcgaggatgaaatggca
gatttcattgtagatgaagatgggaatggtcatcctaggaggggagacgcaaagaaaaag
aaatataggcagggatcagattttagtgctattcgagacgctaacgaaatatttggtgat
gttgatgagttcttgttaattcgcaaaaagggtttggcgtctagtgaaaggatggaaaga
aggctcgaagatgagtttgaaccaactgttctttctgagaagtacatgacagggaaagat
gatgaaatccgccaacttgatattcctgagagaatgcagatatctgaagaaagcactgga
agccctcctgtcgatgaaattagtattgaagaagagagcaattggatatatgctcaactt
atttctctaataaaagattctgatggacaaggacttcagacatttgaaggacaaggtttc
tcggttaacaaggatgacattgcaaaatttttggagctacatcatgtgcagaaattagag
attccatttatatccatgtatcgaaaggagcaatgccgtagcttgttggactctgctgat
gttgatgaccttaatatagagaagaaacctgagaccaagtggcataaggtcttctggatg
attcaggacttggataggaagtggctccttcttcgaaaaaggaaaatggcgttgcatggt
tactatacaaaacgtttcgaagaagagtctaggagggtctatgatgaaactaggcttaac
ttaaaccagtatctttttgaatcaatcattaagtctcttaaggtagcagaaacagaaaga
gaagttgatgatgtagattccaagttcaacttgcattttcctgctggtgaaattggtatt
gatgaaggccagttcaagaggccgaagcggaaatcacagtatagcatctgcagcaaagcg
gggctctgggaggttgcaaacaaatttgggtatagtgctgagcaattgggacttgcattg
tccctagaaaaactggttgatgaactggaggatgcaaaggaaacaccagaggacatggca
ttgaactttgtgtgcgcaatgtttgaaaatcctcaagctgttcttaagggtgcacggcat
atggctgcagttgagataagttgcgagccatcagtcaaaaagtatgtccgtggcatttat
atggagaacgcagtagtctcaactagtccaacagcagatgggaatggagtaatagatccg
ttccatgagtattctggggttaagtggttacgtgaaaagccattgagcaagtttgaggga
gcgcagtggcttctcattcagaaggcagaagaagagaaacttcttcaagtaactttcaag
ctgcctgagaattacatgaataggctaattagcgactgcaatgaacactatctaagtgtt
ggtgtaagtaagtatgctcaactctggaatgagcaaagaaaattgatactggaagatgca
cttcatgcttttattttgccatcaatggagaaagaagcaagatccttgctaactagcaga
gccaaaactcgattgctttcggagtatggacaggctctgtggaacaaggtgtctgcaggg
ccatatcaaaagaaagaaatggacattaactcagatgaggaggctgcacccagggtcatg
gcatgttgttggggacctggaaagccaccaaatacgtttgtgatgctggattcatcggga
gaggtgcttgatgtgctatatgctggatccctcacactgcgatctcaaaatgttaacgat
cagcaacgtaaaaagagtgaccaggatcgggttttaaagtttatgatggaccaccaaccg
catgttgtggctttaggagctgtcaatttgtcttgtactcggctgaaggatgatatttat
gaggtcatattccagatggtggaggaaaaacctagagatgttggacatgggatggatgat
ttaactattgtttatgtagatgaatcgcttcctaggctatttgaaaactctcgaatctcg
ggcgaacagctacctcaacagtcagggatcgtgaaacgtgcagttgctcttggacgatat
ctccagaatccactagcaatggtcgcgactttatgcggtccaggcagggaaattttgtct
tggaagcttcatcctttggagaattttcttcaggttgacgaaaagtatgggatggttgaa
caggttatggttgacataacgaaccaggttggaatcgacattaatttggcagctagccat
gagtggtttttctctcctttacagttcatttcgggacttgggcctagaaaagctgcatcc
ttgcagaggtctcttgtaagagctggttcgatatttgtccgcaaggacctgataatacat
gggcttgggaaaaaggtttttgtaaatgcagccggtttcttgcgcatccggaggagtggg
ctggctgctagtagtagtcaatttatcgacttgttggatgacaccagaatacatcccgaa
tcatatggtcttgcacaggaattggcgaaagatatttatgatcaggatgtcagaggtgat
tccaatgatgatgaggatgcgatagagatggcaatagagcacgtgagggatcggccagcc
tctttgagaaaagttgtccttgatgagtatctagcaagcaaaaaacgggagaataagaag
gaaacttacagtaatatcatgagagaattaagctgcggtttccaggattggcggataccg
tttaaagatccaagtccagaggaagagttttttatgatctcaggtgaaactgaagacacc
atagctgagggcagaattgtccaggccacggttcggagattgcagggtggaagagccata
tgtgttttagattctgggttaactgggatgctcatgaaggaagatttcgcagatgatggg
agagatattgttgagttgtcggaccgactgaaagaaggcgaaatcctaacttgcaagatc
aaatcgattaaaaaggagaggtatcaagtattccttatttgcaaagaaagcgaaatgaga
aacaacaggcaccagcagaaccagaatctagatccttattaccatgaggatagaaacagc
ctcctgattgagaaagagaaagctcgaaaagaaaaggagctggtgaggaagcattttaag
tctcggatgattgtccatcctcgtttccagaacataactgctgaccaagcaacagagtat
ttgtctgacaaagattttggagaaagcattgttcgtcctagttctcgaggactcaattat
ctgacgctaactcttaagatatacgatggggtttatgctcacaaggagataattgaaggt
gggaaagaaaacaaggatatcacaagcctacagtgtattgggaagaccctgaaaattgga
gaggacaccttcgaggatctagatgaggtcatggatcggtatgttgatcctctggtctct
catctcaagaccatgcttaaatatcggaagttccgaaaagggacaaaagcagaagtcgat
gagcttctcaggatcgagaagggtgaaaaccctgcaaggatagtttactgtttcgggatt
tcacacgaacatccaggcaccttcatactgtcttacataaggagcacaaatccacatcac
gagtacattggtttatatcctaagggattcaagtttaggaaaaggatgttcgaagacatt
gacaggcttgtgtcgtacttccagaggcatattgatgacccgttgcaggaaacagttcca
tcgatcaggtctgttgctgccatggtacctatgagaagcccagcagaccgtggctcttca
ggtggaggtggttggggtggttctcagagtgaaggaggctggaaaggaaactcagatcgc
tcatctggaccaagaccagggagaggcggagagtacagaaacggtggaggacgtggtgat
gggcatgcaagtggagcgccaaggccgtttggtggtcgtggtcgaggcaaaggaagtgag
agacgagatggaaatgtcgaatgggggagtcatggtggcggtggggcaggcggcaggggg
gcagtaggggtggttggggaagtgagtctggtggtaaaaagagtgacggtgcaggtggtt
gggctagtgagtctggtggtggcggcggcgggggttggggaaacgattctggcggtaaaa
agagtagcgaggatggtggttggggaggcggttctggttctggtaccggcggttggggaa
acgagtctggtgggaaaaagagcggtgaagatggcggttggggaaacgagtctagtggta
aaaagagcgatggagacggcggttggggaggggattccggcggacgaaagagtggtggtg
gcggcggcggcggcggtggatggtgaaaagacaaatgcattagtagtaattagcttctct
ctaaatgactttttgtttatgctcctccttttgtcttataacttgatggttaattag

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