Eutrema salsugineum (saltwater cress): EUTSA_v10018001mg
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Entry
EUTSA_v10018001mg CDS
T02985
Name
(RefSeq) hypothetical protein
KO
K11292
transcription elongation factor SPT6
Organism
eus
Eutrema salsugineum (saltwater cress)
Brite
KEGG Orthology (KO) [BR:
eus00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
eus03021
]
EUTSA_v10018001mg
03036 Chromosome and associated proteins [BR:
eus03036
]
EUTSA_v10018001mg
Transcription machinery [BR:
eus03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription elongation factors
EUTSA_v10018001mg
Chromosome and associated proteins [BR:
eus03036
]
Eukaryotic type
Nucleosome assembly factors
Histone chaperones
Other Histone chaperones and regulators
EUTSA_v10018001mg
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SH2_2
HHH_7
YqgF
SPT6_acidic
Tex_central_region
Spt6_S1
HHH_9
HTH_44
HHH_3
SH2
Tex_N
Motif
Other DBs
NCBI-GeneID:
18008553
NCBI-ProteinID:
XP_006391558
UniProt:
V4KCI9
LinkDB
All DBs
Position
Unknown
AA seq
1658 aa
AA seq
DB search
MGRNTHSDEEDDHELEDEDVEPAHGDPVDNNDNDDDDEEDEGEDEYENDGFIVGDEEEEE
EEEEEEEKQDSDEERQKKKKRRRKKDEDLDEDDYLLLQDNNVKLQKRKYKRLKKAQRERE
NGQGGSSDDELDGSGGAGRSAEDKIKDNLFDDVDDLPDDVGDEDDLAVEEDVVGSEDEMA
DFIVDEDGNGHPRRGDAKKKKYRQGSDFSAIRDANEIFGDVDEFLLIRKKGLASSERMER
RLEDEFEPTVLSEKYMTGKDDEIRQLDIPERMQISEESTGSPPVDEISIEEESNWIYAQL
ISLIKDSDGQGLQTFEGQGFSVNKDDIAKFLELHHVQKLEIPFISMYRKEQCRSLLDSAD
VDDLNIEKKPETKWHKVFWMIQDLDRKWLLLRKRKMALHGYYTKRFEEESRRVYDETRLN
LNQYLFESIIKSLKVAETEREVDDVDSKFNLHFPAGEIGIDEGQFKRPKRKSQYSICSKA
GLWEVANKFGYSAEQLGLALSLEKLVDELEDAKETPEDMALNFVCAMFENPQAVLKGARH
MAAVEISCEPSVKKYVRGIYMENAVVSTSPTADGNGVIDPFHEYSGVKWLREKPLSKFEG
AQWLLIQKAEEEKLLQVTFKLPENYMNRLISDCNEHYLSVGVSKYAQLWNEQRKLILEDA
LHAFILPSMEKEARSLLTSRAKTRLLSEYGQALWNKVSAGPYQKKEMDINSDEEAAPRVM
ACCWGPGKPPNTFVMLDSSGEVLDVLYAGSLTLRSQNVNDQQRKKSDQDRVLKFMMDHQP
HVVALGAVNLSCTRLKDDIYEVIFQMVEEKPRDVGHGMDDLTIVYVDESLPRLFENSRIS
GEQLPQQSGIVKRAVALGRYLQNPLAMVATLCGPGREILSWKLHPLENFLQVDEKYGMVE
QVMVDITNQVGIDINLAASHEWFFSPLQFISGLGPRKAASLQRSLVRAGSIFVRKDLIIH
GLGKKVFVNAAGFLRIRRSGLAASSSQFIDLLDDTRIHPESYGLAQELAKDIYDQDVRGD
SNDDEDAIEMAIEHVRDRPASLRKVVLDEYLASKKRENKKETYSNIMRELSCGFQDWRIP
FKDPSPEEEFFMISGETEDTIAEGRIVQATVRRLQGGRAICVLDSGLTGMLMKEDFADDG
RDIVELSDRLKEGEILTCKIKSIKKERYQVFLICKESEMRNNRHQQNQNLDPYYHEDRNS
LLIEKEKARKEKELVRKHFKSRMIVHPRFQNITADQATEYLSDKDFGESIVRPSSRGLNY
LTLTLKIYDGVYAHKEIIEGGKENKDITSLQCIGKTLKIGEDTFEDLDEVMDRYVDPLVS
HLKTMLKYRKFRKGTKAEVDELLRIEKGENPARIVYCFGISHEHPGTFILSYIRSTNPHH
EYIGLYPKGFKFRKRMFEDIDRLVSYFQRHIDDPLQETVPSIRSVAAMVPMRSPADRGSS
GGGGWGGSQSEGGWKGNSDRSSGPRPGRGGEYRNGGGRGDGHASGAPRPFGGRGRGKGSE
RRDGNVEWGSHGGGGAGGRGAVGVVGEVSLVVKRVTVQVVGLVSLVVAAAGVGETILAVK
RVARMVVGEAVLVLVPAVGETSLVGKRAVKMAVGETSLVVKRAMETAVGEGIPADERVVV
AAAAAVDGEKTNALVVISFSLNDFLFMLLLLSYNLMVN
NT seq
4977 nt
NT seq
+upstream
nt +downstream
nt
atgggaagaaacacacattctgacgaagaagatgatcatgagctcgaagacgaggatgtt
gagccggctcatggagatccagttgataacaatgacaacgacgatgatgatgaagaggac
gaaggtgaggatgagtatgagaatgatggattcatagtgggtgatgaagaagaagaagag
gaggaagaagaggaagaagaaaagcaagatagcgatgaggagaggcagaaaaagaaaaag
agacgaaggaaaaaggacgaagatcttgatgaagatgattatcttcttcttcaagataac
aatgtcaaactccaaaagaggaagtacaagaggttgaaaaaagctcaaagggaaagggaa
aatggtcaagggggatcatcggatgatgaacttgatgggagtggtggagctggaagaagt
gctgaggacaagatcaaagacaatctgtttgatgatgttgatgatctgcctgatgatgta
ggcgatgaggacgacttagctgtggaagaagatgttgtcgggagcgaggatgaaatggca
gatttcattgtagatgaagatgggaatggtcatcctaggaggggagacgcaaagaaaaag
aaatataggcagggatcagattttagtgctattcgagacgctaacgaaatatttggtgat
gttgatgagttcttgttaattcgcaaaaagggtttggcgtctagtgaaaggatggaaaga
aggctcgaagatgagtttgaaccaactgttctttctgagaagtacatgacagggaaagat
gatgaaatccgccaacttgatattcctgagagaatgcagatatctgaagaaagcactgga
agccctcctgtcgatgaaattagtattgaagaagagagcaattggatatatgctcaactt
atttctctaataaaagattctgatggacaaggacttcagacatttgaaggacaaggtttc
tcggttaacaaggatgacattgcaaaatttttggagctacatcatgtgcagaaattagag
attccatttatatccatgtatcgaaaggagcaatgccgtagcttgttggactctgctgat
gttgatgaccttaatatagagaagaaacctgagaccaagtggcataaggtcttctggatg
attcaggacttggataggaagtggctccttcttcgaaaaaggaaaatggcgttgcatggt
tactatacaaaacgtttcgaagaagagtctaggagggtctatgatgaaactaggcttaac
ttaaaccagtatctttttgaatcaatcattaagtctcttaaggtagcagaaacagaaaga
gaagttgatgatgtagattccaagttcaacttgcattttcctgctggtgaaattggtatt
gatgaaggccagttcaagaggccgaagcggaaatcacagtatagcatctgcagcaaagcg
gggctctgggaggttgcaaacaaatttgggtatagtgctgagcaattgggacttgcattg
tccctagaaaaactggttgatgaactggaggatgcaaaggaaacaccagaggacatggca
ttgaactttgtgtgcgcaatgtttgaaaatcctcaagctgttcttaagggtgcacggcat
atggctgcagttgagataagttgcgagccatcagtcaaaaagtatgtccgtggcatttat
atggagaacgcagtagtctcaactagtccaacagcagatgggaatggagtaatagatccg
ttccatgagtattctggggttaagtggttacgtgaaaagccattgagcaagtttgaggga
gcgcagtggcttctcattcagaaggcagaagaagagaaacttcttcaagtaactttcaag
ctgcctgagaattacatgaataggctaattagcgactgcaatgaacactatctaagtgtt
ggtgtaagtaagtatgctcaactctggaatgagcaaagaaaattgatactggaagatgca
cttcatgcttttattttgccatcaatggagaaagaagcaagatccttgctaactagcaga
gccaaaactcgattgctttcggagtatggacaggctctgtggaacaaggtgtctgcaggg
ccatatcaaaagaaagaaatggacattaactcagatgaggaggctgcacccagggtcatg
gcatgttgttggggacctggaaagccaccaaatacgtttgtgatgctggattcatcggga
gaggtgcttgatgtgctatatgctggatccctcacactgcgatctcaaaatgttaacgat
cagcaacgtaaaaagagtgaccaggatcgggttttaaagtttatgatggaccaccaaccg
catgttgtggctttaggagctgtcaatttgtcttgtactcggctgaaggatgatatttat
gaggtcatattccagatggtggaggaaaaacctagagatgttggacatgggatggatgat
ttaactattgtttatgtagatgaatcgcttcctaggctatttgaaaactctcgaatctcg
ggcgaacagctacctcaacagtcagggatcgtgaaacgtgcagttgctcttggacgatat
ctccagaatccactagcaatggtcgcgactttatgcggtccaggcagggaaattttgtct
tggaagcttcatcctttggagaattttcttcaggttgacgaaaagtatgggatggttgaa
caggttatggttgacataacgaaccaggttggaatcgacattaatttggcagctagccat
gagtggtttttctctcctttacagttcatttcgggacttgggcctagaaaagctgcatcc
ttgcagaggtctcttgtaagagctggttcgatatttgtccgcaaggacctgataatacat
gggcttgggaaaaaggtttttgtaaatgcagccggtttcttgcgcatccggaggagtggg
ctggctgctagtagtagtcaatttatcgacttgttggatgacaccagaatacatcccgaa
tcatatggtcttgcacaggaattggcgaaagatatttatgatcaggatgtcagaggtgat
tccaatgatgatgaggatgcgatagagatggcaatagagcacgtgagggatcggccagcc
tctttgagaaaagttgtccttgatgagtatctagcaagcaaaaaacgggagaataagaag
gaaacttacagtaatatcatgagagaattaagctgcggtttccaggattggcggataccg
tttaaagatccaagtccagaggaagagttttttatgatctcaggtgaaactgaagacacc
atagctgagggcagaattgtccaggccacggttcggagattgcagggtggaagagccata
tgtgttttagattctgggttaactgggatgctcatgaaggaagatttcgcagatgatggg
agagatattgttgagttgtcggaccgactgaaagaaggcgaaatcctaacttgcaagatc
aaatcgattaaaaaggagaggtatcaagtattccttatttgcaaagaaagcgaaatgaga
aacaacaggcaccagcagaaccagaatctagatccttattaccatgaggatagaaacagc
ctcctgattgagaaagagaaagctcgaaaagaaaaggagctggtgaggaagcattttaag
tctcggatgattgtccatcctcgtttccagaacataactgctgaccaagcaacagagtat
ttgtctgacaaagattttggagaaagcattgttcgtcctagttctcgaggactcaattat
ctgacgctaactcttaagatatacgatggggtttatgctcacaaggagataattgaaggt
gggaaagaaaacaaggatatcacaagcctacagtgtattgggaagaccctgaaaattgga
gaggacaccttcgaggatctagatgaggtcatggatcggtatgttgatcctctggtctct
catctcaagaccatgcttaaatatcggaagttccgaaaagggacaaaagcagaagtcgat
gagcttctcaggatcgagaagggtgaaaaccctgcaaggatagtttactgtttcgggatt
tcacacgaacatccaggcaccttcatactgtcttacataaggagcacaaatccacatcac
gagtacattggtttatatcctaagggattcaagtttaggaaaaggatgttcgaagacatt
gacaggcttgtgtcgtacttccagaggcatattgatgacccgttgcaggaaacagttcca
tcgatcaggtctgttgctgccatggtacctatgagaagcccagcagaccgtggctcttca
ggtggaggtggttggggtggttctcagagtgaaggaggctggaaaggaaactcagatcgc
tcatctggaccaagaccagggagaggcggagagtacagaaacggtggaggacgtggtgat
gggcatgcaagtggagcgccaaggccgtttggtggtcgtggtcgaggcaaaggaagtgag
agacgagatggaaatgtcgaatgggggagtcatggtggcggtggggcaggcggcaggggg
gcagtaggggtggttggggaagtgagtctggtggtaaaaagagtgacggtgcaggtggtt
gggctagtgagtctggtggtggcggcggcgggggttggggaaacgattctggcggtaaaa
agagtagcgaggatggtggttggggaggcggttctggttctggtaccggcggttggggaa
acgagtctggtgggaaaaagagcggtgaagatggcggttggggaaacgagtctagtggta
aaaagagcgatggagacggcggttggggaggggattccggcggacgaaagagtggtggtg
gcggcggcggcggcggtggatggtgaaaagacaaatgcattagtagtaattagcttctct
ctaaatgactttttgtttatgctcctccttttgtcttataacttgatggttaattag
DBGET
integrated database retrieval system