Eutrema salsugineum (saltwater cress): EUTSA_v10018029mg
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Entry
EUTSA_v10018029mg CDS
T02985
Name
(RefSeq) hypothetical protein
KO
K12600
superkiller protein 3
Organism
eus
Eutrema salsugineum (saltwater cress)
Pathway
eus03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
eus00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
EUTSA_v10018029mg
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
eus03019
]
EUTSA_v10018029mg
Messenger RNA biogenesis [BR:
eus03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Ski complex
EUTSA_v10018029mg
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
TPR_1
TPR_2
TPR_17
TPR_11
TPR_14
TPR_16
TPR_8
TPR_19
TPR_CcmH_CycH
TPR_7
TPR_12
TPR_9
TPR_20
TPR_NPHP3
BTAD
NatA_aux_su
Motif
Other DBs
NCBI-GeneID:
18008518
NCBI-ProteinID:
XP_006390169
UniProt:
V4JQE4
LinkDB
All DBs
Position
Unknown
AA seq
1168 aa
AA seq
DB search
MVLEQLEKSVEANPDDPSLQFKLGLYLWENGGDSEKAAERFVLSAKLNPDNAAAFKYLGH
YYSRVTLDLNRAAKCYQRAVLLNPNDSDSGEALCDLFDRQGKEMLEIAVCRDASEKSPKA
FWAFCRLGYIQLHQKKWSEAVQSLQHAIRGYPTMSDLWEALGLAYQRLGMFTAAIKAYGR
AIELDETKIFALTESANIFLMLGSYRKGVELFEQALKISPQNIAVLYGLASGLLSWSKEC
INLGAFGWAASLLEDARKAAKVSSELASNMSCIWKLHGDIQLTYARCFPWSGGTENSEFT
LKTFKDSILSWRSICYSAALSAKSSYQRALHLAPWQANVYTDIAITCDLVSSLSDDSETT
SSWKLPEKMALGALLLECDNSEFWVALGCMSDNSALKLHALIRALHLDVSLAVAWAFMGQ
IFRESDEMKLAKQAFDCARSIDPTLALPWAGSADTYARESISDEAFESCLRAAQISPLAE
FQVGLAWLALLQGNISSPQIYACIEQAVQRSPDYPESHNLHGLVCEARRNYHTAIASYRQ
ALAAMSVYPDNSVKSHAGKISINLARSLSKAGQFKESAMECANLKSKGLLDAGGLQMYAY
SLWKIGENDSALSVIRDLAGRISTMEKTSRAFPISFICSLLYCISGLDSAITSIQKMPKD
FFQSSKISFIVSAIHSLDQSDRLQSIVASTRSYITSQEEIVAMHYLIALSKLLKTGAGDF
LGFEKGIAHLRKALHMYPHSNLLRNLLGYILLAGEGTKEACTASRCCIINVSDCANKEGL
KSALEVLGGGSVACNVIGNTAPRFSFPTCQCQCLNAPVVVVELQRFLHQEPWNSDVRYLL
ILNLVQKAREQRFPRQLCSAIERLISAALSDETCSKEGEYQKFQLLLCASEISLQKGYIA
ESIDYARKASSLSLPRSYLFLGHLQLCRAYAAKGSTSNMQEEYRACLELKTDSNIGWICL
KLIESQFDLEPDANLLEMSLEESSRQKKDSWKEWMAIYSLALGLVSVGKKDFFSAEEFLA
QACSLGNSESCLLLCRGAVCMELARQSNDSQFLSQAVKSLSKVQASSFVPLPIVYSLLAQ
AHGSLGSKEKWEKNLRLEWLCWPPEMRPAEVYFQMHLLSRQSEDRPETVSGIENSQTPEK
WVLRAIHTNPSCTRYWNVLAKLVEHPIN
NT seq
3507 nt
NT seq
+upstream
nt +downstream
nt
atggtattggagcaactggaaaagtccgtagaggcgaatccagacgacccttctctacag
tttaaactcggtttgtatctgtgggagaatggtggagactctgagaaagcggcggagcgg
tttgtgttgtcggcgaagttaaacccggataatgcggcggcgttcaagtatctagggcat
tactactcgcgtgtgacccttgatctcaatcgagctgctaagtgttaccagagagcagtg
ttgctaaatcctaatgactctgattccggagaagctctgtgcgatttatttgacagacaa
gggaaagagatgttggaaattgcggtttgccgtgacgcttctgaaaagtctcccaaggct
ttctgggcattttgcagattgggttacattcagcttcatcagaagaagtggtctgaagct
gttcagagccttcaacatgcgattagaggttatccaaccatgtctgacttgtgggaagct
ctgggcctggcttaccagcgacttggaatgtttactgctgctatcaaggcgtatggccgt
gccattgaattagatgagaccaagatttttgcattaacggagagtgcaaacatctttttg
atgcttggttcatatagaaagggtgtggagctctttgagcaagcgctgaagatttcacct
cagaatattgctgtgctctatggtcttgcttctggattgcttagttggtcaaaggaatgc
ataaatttgggcgcatttggatgggcagcttcgttattggaggatgctcgtaaagctgca
aaagttagcagtgagctggccagcaacatgtcctgtatatggaaattacatggagatatt
cagcttacatatgcaagatgctttccgtggtctggtggaactgaaaactcagaattcact
ttaaagacattcaaagattcaatcctttcttggagaagcatttgttactcagctgcattg
tcagccaaatcgtcttaccagcgagctctacacttagccccttggcaagctaatgtttat
actgacattgccataacctgtgatctcgtttcaagtttaagcgatgactctgaaactact
agttcttggaagctaccagaaaagatggctctgggagcgttattgctggaatgcgacaac
tcagagttctgggttgctttgggttgtatgtctgataatagtgctttgaagctacatgct
ttgatccgggcattgcatttggatgtatctttagccgttgcttgggcttttatgggccag
atcttcagggagtcggatgaaatgaaattagcaaagcaggcttttgattgtgctagaagc
atagatcctacacttgcgctaccttgggccggctcagctgatacttacgctagggagtca
atatcagacgaggcttttgagagttgtttacgagctgcacaaatatcaccgcttgcggag
ttccaggttggtttggcatggcttgctttgctgcagggaaatatttcatctccgcagatt
tatgcttgcattgagcaggcagtgcagcggtctcctgattacccagaatcccataacctc
cacgggctagtttgcgaggcaaggcgtaattatcatactgccattgcttcttacaggcaa
gcactagctgcaatgagtgtttaccctgacaattcagtgaaatcgcatgctggaaaaata
tctatcaacttggccaggtcactgagcaaggcaggacaattcaaagaatctgctatggaa
tgcgcaaatttgaagtcaaaaggtttgcttgatgccggaggtttgcaaatgtatgcttac
tctttgtggaagattggtgagaatgattcggctctctcagtgatccgtgatctggctggt
aggatttctaccatggaaaaaacctcaagagccttcccaatcagcttcatctgcagtctt
ctttattgcatatctgggttagattctgctatcaccagcatccagaaaatgccaaaggat
ttctttcagagttcgaaaatcagctttatagtatctgccatccattctcttgatcagagt
gatagacttcagtcgattgttgcgagcactcgtagctatataacatcacaagaagaaata
gttgcaatgcactatttgatagcactcagtaaattgctgaaaactggagcaggtgatttc
cttggatttgagaaagggattgcccacctcagaaaagctcttcatatgtatcctcatagt
aatttgttaaggaacctgcttggatatatcttgttagctggtgaaggaacaaaagaggct
tgcactgctagtagatgctgtattataaatgtctccgattgtgcaaataaggaaggtctg
aagtccgcattggaggtccttggtggaggatcagttgcttgcaatgtaattggtaataca
gctccaaggttctcatttccgacatgccaatgtcagtgtctgaatgctcctgttgttgtt
gtggaactgcaaagattcttgcatcaagaaccttggaacagcgatgtaagatacttgctt
attctgaatctcgtgcagaaggcccgtgaacagagatttcctcgccagctttgtagtgct
attgagcgtctaatctctgcggcactctctgatgagacctgttcgaaggaaggcgaatat
cagaagttccagcttcttctttgtgcttctgagatcagtttgcagaagggatatatagca
gagtccattgactatgctcgaaaagcttcttccctttcgcttccacgcagctacctattt
ctaggacatttgcagctttgccgtgcctatgcagcaaaagggagcaccagtaacatgcaa
gaggaatacagagcttgtttggaactcaagactgactcaaatattggttggatctgcctg
aagctcatagaatctcagtttgatctggaacctgatgctaacctcttagaaatgagccta
gaagaaagctcgagacagaagaaggattcatggaaagagtggatggctatatacagctta
gctcttggcttagtttccgtcgggaaaaaagactttttctcagcagaggagttccttgca
caagcttgttcgttgggtaattcagagagctgtctacttctctgtcgtggtgctgtctgc
atggagctggctagacagtctaatgactctcagttcctctcacaagctgtaaagagtctt
agcaaagttcaagcgagttcttttgttcctttgcctattgtgtattcattattagctcaa
gcacatggaagtcttggctctaaagagaaatgggaaaagaaccttcgtcttgaatggctc
tgctggccaccagagatgaggcctgcagaggtttacttccagatgcatttactttcaaga
caatcagaagatagacccgaaaccgtttcagggattgaaaactctcaaacccctgagaaa
tgggtgcttagggcgattcacactaacccttcttgtacgagatattggaacgtcttggct
aagcttgttgaacatcccattaactaa
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integrated database retrieval system
