Eutrema salsugineum (saltwater cress): EUTSA_v10018369mg
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Entry
EUTSA_v10018369mg CDS
T02985
Name
(RefSeq) hypothetical protein
KO
K13126
polyadenylate-binding protein
Organism
eus
Eutrema salsugineum (saltwater cress)
Pathway
eus03015
mRNA surveillance pathway
eus03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
eus00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
EUTSA_v10018369mg
09123 Folding, sorting and degradation
03018 RNA degradation
EUTSA_v10018369mg
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
eus03019
]
EUTSA_v10018369mg
03041 Spliceosome [BR:
eus03041
]
EUTSA_v10018369mg
Messenger RNA biogenesis [BR:
eus03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
EUTSA_v10018369mg
mRNA cycle factors
Stress granule specific factors
EUTSA_v10018369mg
Spliceosome [BR:
eus03041
]
Complex C
Other components
Complex C specific factors
EUTSA_v10018369mg
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RRM_1
Nup35_RRM_2
RRM_5
RRM_Nup35
RRM_3
Motif
Other DBs
NCBI-GeneID:
18007892
NCBI-ProteinID:
XP_006391273
UniProt:
V4KBU4
LinkDB
All DBs
Position
Unknown
AA seq
545 aa
AA seq
DB search
MAKANPSRKRKPEDDLETKPVLREHRETSEEKVTTKGFADTVQQIKGRVELLESKSDQAN
LISVKETVEGLGEKTAARKKTLFVDHLHPQTKISDIIDFFNDVGQVIRVRLTVDGMDEKL
GCGFVEFASSNEAKRALQERNGEYLHDCKILLVDAANRGAAYPPPKFCIDHMVWNQDYLQ
RESIPILPIKEDETPPDFVEDVLFIANLSPQTNKMVQITRFFKDVGEVVSVRLAVDRMGK
HLGYGFVEFASAYEAKMALEEKNGEYLHDHPILLMKGVDQIPDSVEAAAIRNKTVFVANF
TPIKKNISDIIGFFKDVGEVVHVRLILTRRGRQNGFAFVEFASANEAKKALEKNGECLDD
RNIVVRVVETPYPQIKYCLDHNVEAFARYEDNLRQAEDAGVKGLDEPSDFVEDVAVLKKT
LFVANLSENFKPKYIKRFFKSAGEVVRIRLIVDQWGERVGYAFVEFASANEAKKALKEKN
RGMIFLFEADIAPYPFRLKYDLAEKLWYEDNLRRFSLEFETKPDPKRLKETPHWSGKKII
FSDEI
NT seq
1638 nt
NT seq
+upstream
nt +downstream
nt
atggccaaagctaatccatctcgtaagcgaaagccggaagatgatttggagaccaaaccg
gttctgagggaacatagggaaacttccgaggagaaggtgacaacgaaaggatttgctgat
actgtccagcagatcaaaggaagggtcgagttgttggagtcaaagtctgatcaggctaat
ttaatctcagtgaaggagacagtggaaggacttggtgagaaaactgccgcaagaaaaaag
acgctctttgttgaccatctccatccccaaactaaaatatcagatatcattgatttcttc
aatgatgttggacaagttattcgtgttcgacttactgtagacggcatggatgagaaactg
ggctgtggctttgttgagtttgcttcctctaacgaagctaagagggctctgcaagagagg
aacggtgaatacttgcacgattgtaagattcttcttgttgatgcagcaaataggggagct
gcataccctccacccaagttttgcatagatcacatggtttggaaccaagactaccttcaa
cgagaaagcattccgatccttcctattaaagaagatgagacacctcccgattttgttgag
gatgtactctttattgccaatctctctccccaaacaaataaaatggtacaaatcacccgt
ttcttcaaagatgttggagaagttgttagtgttcgacttgctgtagaccgcatgggcaag
catctgggctatggctttgtcgagtttgcttctgcttacgaagcaaagatggcgctggaa
gagaagaatggtgaatatttgcacgatcatcccattttgttgatgaaaggagttgatcaa
attcctgattctgttgaggcagctgccataagaaataagacggtctttgttgccaatttc
actcccataaaaaagaatatatcagatatcatcggtttcttcaaagatgttggagaagtt
gttcatgttcgacttattctaacccgccgtggcagacaaaatggctttgcctttgttgag
tttgcttctgctaacgaagcaaagaaggcgctggaaaagaacggtgaatgtttggacgat
cgcaacattgttgttcgtgttgttgagacgccataccctcaaattaagtattgcctagat
cacaatgttgaagcttttgctaggtacgaagacaaccttcgacaagcagaagatgcggga
gtgaaaggacttgatgaaccttccgattttgttgaggatgttgccgtcttaaaaaagacg
ctctttgttgctaatctctctgaaaactttaaaccgaaatatatcaagaggttcttcaag
agtgctggagaagttgttcgtattcgacttattgtagaccagtggggtgagcgtgtgggc
tatgcctttgttgagtttgcttctgctaacgaagcgaaaaaggcgctgaaagagaaaaat
cgtggcatgatttttcttttcgaggctgacatagctccataccctttccgactcaagtac
gaccttgcagagaagctttggtacgaagacaaccttcgacgatttagccttgaatttgaa
accaaaccggacccaaagagactgaaggaaacacctcattggagtgggaagaagataatc
ttctctgacgagatatag
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