Eutrema salsugineum (saltwater cress): EUTSA_v10018488mg
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Entry
EUTSA_v10018488mg CDS
T02985
Name
(RefSeq) hypothetical protein
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
eus
Eutrema salsugineum (saltwater cress)
Pathway
eus03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
eus00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
EUTSA_v10018488mg
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
eus03021
]
EUTSA_v10018488mg
03019 Messenger RNA biogenesis [BR:
eus03019
]
EUTSA_v10018488mg
Transcription machinery [BR:
eus03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
EUTSA_v10018488mg
Messenger RNA biogenesis [BR:
eus03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
EUTSA_v10018488mg
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
zf_PCFS4
Pcf11_C
DUF7130
Motif
Other DBs
NCBI-GeneID:
18008632
NCBI-ProteinID:
XP_006391402
UniProt:
V4KN07
LinkDB
All DBs
Position
Unknown
AA seq
473 aa
AA seq
DB search
MEWVDEEQEFDTCSSEKRIPSLESKSATDFSFWQYSRIDRSPISKAISIAGGGAAIGKEQ
RKMKKMRNAHRNANAGTTLKRRIDNRGCGGSASGVFQEDRIHYAPPPQKRTRFQPQTQSQ
SRIPLYRDGSNLSRVSNYGDVIRSNSSNSFPLTLRNNDSSSQSNTDYQKPFGCGNPNSNS
QSVPRPLPYRKLDDFDSLPEWVPNRLNFPIKSPNFVPDVTGVRFNAQAPVFTNVSNSTPL
NHSNMVSIVTQAMPQQPILSKDLSDLLTLLNNEKENQNKESPLGLDFGSVNLNVRNECVI
KSLYSDMPRQCSSCGVRFKRQEDHSNHMDWHVRKNRMAKGATKTGTRSSKNPKKSQVLFA
SLSLWLLAATGGTIETLNRGEEEGNSQQMEQHTVPADENQKLCALCVEPFEEFFSHEEDE
WLYKDAVYLNVKELGPIVHVKCMPETREGSGRDSRETMLRPVTVPSVASALVC
NT seq
1422 nt
NT seq
+upstream
nt +downstream
nt
atggagtgggtagacgaggagcaagagtttgacacatgttcatcggagaaaaggattcca
agtttagaaagcaaatcagcaacggattttagcttttggcagtactcccgaatcgacaga
tctccaatctccaaggctatttccatcgcaggaggtggagcagccattggaaaggagcaa
agaaaaatgaagaaaatgaggaatgcacaccggaacgcaaacgctgggacgacgttgaag
agacgaatcgacaatcgcggttgcggcggctctgccagcggagttttccaggaggatcgg
atccattacgcaccgccgcctcagaaacgcaccagattccaaccgcaaacgcaatcccaa
tccaggattcctctgtatcgtgatggtagtaacttgtctagggtttcaaattacggtgat
gtgattcgttctaattcaagcaatagctttcctcttactttacgtaataatgattcttct
tcgcaatctaacaccgattatcagaaaccttttggttgtggaaaccctaactctaattcc
caatctgttccgcgtcctttaccttatcgtaagctagatgatttcgattcgttacccgaa
tgggttccaaaccggttgaattttccaattaaatctccgaatttcgtaccggacgtaact
ggagttcggtttaacgctcaagcacctgtgtttacgaatgtttcaaattcaacgcctttg
aatcactcgaacatggtttcaattgtgacacaagcaatgcctcaacaaccaattttgagc
aaagacttgtctgatttacttacccttttgaataacgagaaagagaatcaaaacaaagaa
tctcctcttggtctcgatttcggttcagtgaaccttaatgttcgtaacgaatgtgtgatt
aagtctctgtattccgatatgccgaggcaatgttcttcgtgtggggttagattcaaacgt
caagaagatcatagcaatcacatggactggcacgtgaggaagaacaggatggccaaaggc
gcgaccaaaaccggtacgaggtcgagcaagaacccgaagaaatcgcaggttttgtttgcg
agcttgtctctatggctccttgcagctacaggagggacgatcgaaaccctgaatagggga
gaagaagagggaaattcacagcagatggagcaacataccgtgcctgctgatgaaaaccag
aagctttgtgcgttatgcgttgagccgtttgaagagttctttagccatgaagaagatgag
tggttgtacaaggatgctgtttacttgaacgtgaaggagttgggtcctatagttcatgtt
aagtgtatgcctgaaacccgagaagggtctggaagggattcgagagagacgatgttgagg
cctgttacggttccatcggttgcgagtgcattggtctgctga
DBGET
integrated database retrieval system
