Eutrema salsugineum (saltwater cress): EUTSA_v10019987mg
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Entry
EUTSA_v10019987mg CDS
T02985
Name
(RefSeq) hypothetical protein
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
eus
Eutrema salsugineum (saltwater cress)
Pathway
eus03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
eus00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
EUTSA_v10019987mg
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
eus03019
]
EUTSA_v10019987mg
03041 Spliceosome [BR:
eus03041
]
EUTSA_v10019987mg
03009 Ribosome biogenesis [BR:
eus03009
]
EUTSA_v10019987mg
03016 Transfer RNA biogenesis [BR:
eus03016
]
EUTSA_v10019987mg
Enzymes [BR:
eus01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
EUTSA_v10019987mg
Messenger RNA biogenesis [BR:
eus03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
EUTSA_v10019987mg
Spliceosome [BR:
eus03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
EUTSA_v10019987mg
Complex C
U4/U6.U5 tri-SnRNP related factors
EUTSA_v10019987mg
Ribosome biogenesis [BR:
eus03009
]
Eukaryotic type
Pre-60S particles
Helicases
EUTSA_v10019987mg
Transfer RNA biogenesis [BR:
eus03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
EUTSA_v10019987mg
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DSHCT
MTR4_beta-barrel
DEAD
MTR4-like_stalk
DEXQc_Suv3
Helicase_C
nSTAND3
Motif
Other DBs
NCBI-GeneID:
18023852
NCBI-ProteinID:
XP_006407652
UniProt:
V4LF64
LinkDB
All DBs
Position
Unknown
AA seq
995 aa
AA seq
DB search
MNTQMEEPETLGKRKVAENSKLSDETPTQEPTTKRRSSQKRACVHEVAVPNGYAATKEEL
IHGTLDNPVFNGDMAKKYPFQLDPFQSVSVACLERKESILVSAHTSAGKTAVAEYAIAMA
FRDKQRVIYTSPLKALSNQKYRELQHEFQDVGLMTGDVTISPNASCLVMTTEILRAMLYR
GSEVLKEVAWVVFDEIHYMKDRERGVVWEESIIFLPPAIKMVFLSATMSNATEFAEWICY
LHKQPCHVVYTDFRPTPLQHYAFPMGGSGLYLVVDENEQFREDNFVKMLDTFPKPKSVDG
KRSANGKSGGRATKGGGGSGDSDVYKIVKMIMERKFQPVIIFSFSRRECEQHALSMSKLD
FNTDEEKEVVEQVFNNAIQCLNEEDRSLSAIELMLPLLQRGIAVHHSGLLPVLKELVELL
FQEGLVKALFATETFAMGLNMPAKTVVFTAVKKWDGDSHRYIGSGEYIQMSGRAGRRGKD
ERGICIIMIDEQMEMNTLRDMMLGKPAPLLSTFRLSYYTILNLLSRAEGQFTAEHVIRHS
FHQFQYEKTLPDIESKVSKLEEEAAILDASGQAEVAEYHKLKLDIAPLEKKLMSEIIRPE
RVLCFLDTGRLIKIREGGTDWGWGVVVNVVKKPSVGTSSASSHGGGYIVDTLLHCSTCFS
ENGAKPKPCPPRPGEKGEMHVVPIQLPLISALSRLRISVPSDLRPLEARQSILLAVQELS
SRFPLGFPKLHPVKDMNIQDTEVVDLVSQIEEVEQKLLTHPMHKSQDDQQIKSFQRKAEV
NYEIQQFKSKMRDSQLQKFRDELRNRSRVLKKLGHIDADGVVQLKGRAACLIDTGDELLV
TELMFNGTFNDLDHHQVAALASCFIPVDKSNEKVNLRNELNKPLQQLQDSARKIAEIQHE
CKLEIDVEEYVESTIRPFLMDVIYSWSTGSSFAEIMEMTDIFEGSIVRSARRLDEFLNQL
RAAAEAVGESSLESKFAAASESLRRGIMFANSLYL
NT seq
2988 nt
NT seq
+upstream
nt +downstream
nt
atgaacacccaaatggaagaaccagagacactcggcaaaaggaaagtagcggaaaactca
aagctttctgatgagacccctacgcaagaaccgacgacgaagcgtagaagcagccaaaaa
cgggcgtgtgtacatgaagtcgctgttcccaatggttatgcagcaacaaaagaggagctg
attcacgggacgcttgataatcccgtgttcaatggagacatggcgaaaaagtaccctttt
cagcttgacccttttcagagtgtatctgttgcatgcttagagagaaaagaatcgattttg
gtttctgcccacacttcagcgggtaaaacagcagtcgcagagtatgccattgcaatggct
tttagagataagcagagggtaatatatacttcccctttgaaagccttgagtaatcagaag
tacagagagttgcagcacgagtttcaggatgttggtttgatgactggcgatgtcacaatc
tcacctaatgcaagttgtttggtgatgacaacagaaattctcagagcgatgctttataga
gggtctgaagttttaaaggaagttgcttgggttgtttttgatgaaattcattacatgaag
gatagggaaagaggggttgtttgggaagagagtatcattttcttgccacctgctattaag
atggttttcctttctgcaacaatgtcgaatgctaccgaatttgcggaatggatttgttat
ctgcataagcagccatgtcatgttgtgtacacagatttcaggccaacgcccctgcagcat
tatgcttttcctatgggtgggagtggactgtaccttgtcgttgatgagaatgagcagttt
cgagaggataattttgttaagatgcttgatactttcccaaaaccgaaatctgttgatgga
aaaaggagtgcaaatggcaaatcaggtggtagggctactaaaggtggcggtggctctggt
gattctgatgtttacaaaatcgtaaagatgatcatggaaagaaaatttcaaccagtcata
atcttcagcttcagtagaagagagtgtgaacagcatgcattgtcaatgtcaaaactcgat
tttaatacagatgaagagaaggaggttgtcgaacaagtgttcaataatgctattcagtgc
ttgaatgaagaggatagatcattatctgccattgaactgatgttgccgctgctccaacgt
ggtattgctgtccaccattctggtcttcttcctgtcctcaaggaattagtggagcttctt
tttcaggaaggacttgtgaaagcgctttttgccacagaaacttttgctatgggtttgaac
atgcctgcaaaaactgtagtgtttactgctgttaagaagtgggatggtgatagccatcgt
tacattgggtctggtgaatatatccagatgagcggcagggctggacgtcgtggaaaggac
gaacgtggcatctgcattattatgattgatgagcagatggaaatgaatacactcagggac
atgatgttgggcaaaccagcccctttgcttagtacttttaggttgagttactacacaatt
ctgaatctattgagtcgtgccgaaggacaatttacagctgagcatgttataaggcactcg
ttccaccaattccaatatgaaaagactttaccggatatcgagagtaaggtgtccaaactt
gaagaggaagctgccatccttgatgcttctggacaggcggaggttgctgagtaccataag
ctaaaacttgacatagcaccattggaaaagaaacttatgtcagaaataataaggcctgaa
agggtgctttgttttcttgataccggtcggctgattaagatacgagaaggtggaacagac
tggggttggggagttgtagttaatgttgtaaaaaaaccttcagttggaaccagttccgcc
tcttcacatggtggcggatatatagtggatactctacttcattgctctacttgttttagc
gagaacggtgcaaagccaaagccgtgtcctccccgtcctggggaaaagggtgagatgcat
gtggttcctattcagctacccttaatttctgctttgagcagactaaggatatcagttccg
tctgatcttcggccactagaagcaagacaaagcatactacttgcagtacaggagttgtcg
agtcgcttccctttagggttcccaaaactccatccagtcaaggacatgaatattcaagat
acagaggtagtggatctggtcagccaaatcgaagaagttgagcagaagttacttactcat
ccgatgcacaagtctcaagatgatcagcaaatcaagagtttccagaggaaagcggaggtg
aattatgaaattcagcagttcaaatcgaaaatgcgtgattcccagctccaaaagttccga
gatgagcttaggaaccgttctcgggtattaaagaaacttggacacattgatgcggatggc
gtcgtccagttaaagggaagagctgcctgcttgatagacacaggggatgaattgctcgtc
actgaactgatgtttaatggtacttttaatgatctggatcatcaccaagtagctgccctt
gcaagctgtttcattcctgtagataaatcaaatgaaaaggttaatctaagaaatgaactt
aacaaaccgttgcagcagctccaggatagtgcgcgaaaaattgcagagatacaacatgaa
tgcaaactggaaatagacgtcgaagaatatgtagaatctaccattaggcctttcctgatg
gacgttatctactcttggtcaacgggttcgagctttgcagagattatggaaatgactgac
atattcgagggtagtatcgttaggagcgctagaaggctcgacgagtttctgaaccagctt
cgagctgcagcggaagcagttggagagagcagtttggagagcaagtttgcagctgctagc
gagagcttgcgacgaggaattatgtttgcaaattcgctttatttgtag
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integrated database retrieval system
