KEGG   Eutrema salsugineum (saltwater cress): EUTSA_v10019995mg
Entry
EUTSA_v10019995mg CDS       T02985                                 
Name
(RefSeq) hypothetical protein
  KO
K12821  pre-mRNA-processing factor 40
Organism
eus  Eutrema salsugineum (saltwater cress)
Pathway
eus03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:eus00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    EUTSA_v10019995mg
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:eus03041]
    EUTSA_v10019995mg
Spliceosome [BR:eus03041]
 Complex A
  U1 snRNP components
   U1 related factors
    EUTSA_v10019995mg
 Complex B
    EUTSA_v10019995mg
SSDB
Motif
Pfam: FF WW FF_PRPF40A WW_TCERG1 FF_RHG35_4th
Other DBs
NCBI-GeneID: 18024239
NCBI-ProteinID: XP_006406474
UniProt: V4LZH1
LinkDB
Position
Unknown
AA seq 978 aa
MANNPQYPGIQPFQHPNASSLDLPRGFAPSMNFQFRPTIQAPQSEQVARLSTQNFQCVGR
GGPGGTTMNNGFPPQPYAPQLLQSMHHSLERPSQSNQVQHAPLGPPTRISQPNVPIASGT
SLPQPYAQTPDISMSGFGGPRALFSYPSGTSYETLRAPTQVIGPNSHGQAQPRASISQTA
ALSSIMIPTFEQPKAALFQPIPSQVTVIDWVEHTSADGRRYFFNKRTKQSTWAKPVELMT
LFERADARTDWKEHSSPDGRKYYYNKVTKQSTWTMPEEMKIAREQAEKASVQGLHAEGII
GASQVPSRSDTASPAAPTGLPSQTSSTLSTSDISEKLAPTSDWKQAASVSESSPPVENVD
RVQTIADKTSQVCDTAKTADHSATLTITSAATLVEEDTVSVENSGGSDDMSAKNTNQGSG
TGPEESQKHVVESERVDSQLEEKQIHQENFSYNNKSEAVDVFKYLLKSVNVGSDWTWEQA
MREIINDRRYGVLRTLGERKQAFNEFLVQMKRAAEEEKVARQKKRYEDFRRMLEECLELT
PSTRWSKAVTMLEDDERFKDVEREKDRRNIFEDHITDLKEKERVKALEDRKRNITEYRRF
LESCNFIKPNSQWRKVQDRLEVDERCSRLEKIDQLEIFQEYLRDLEREEEEKKKIQKEEQ
KKAERKHRDEFRGLIDEHIAKGELTAKTSWRDYLTKVRDLPVYSAIASNSSGATPKDLFE
DAVEDLKRKYHDLKSQIKDVLKLRKVTIHAGSTFDEFKVSIPEGIGFPPIPDCKLKLVFD
DLLERAKEKEEKEARKQTRHTEKLVDMLRSFKEITASSSWEESKHLVEGSEKFRTIGDES
FRKQTFEDYVSHLKEQAKRIKQNKKVHENVKEEHDKGKDKHRREKDRVRERDSEDHHKRG
AADSYNHDMNEPHGKERRRSGRDNHYRHRERHTSLKEDATDHYKESHKPVPGGGHKKSRQ
QVHFVESRERRVIFLFRF
NT seq 2937 nt   +upstreamnt  +downstreamnt
atggccaataatcctcagtatcctggcattcagccattccagcacccgaatgctagctcc
ttagatttaccccgaggctttgctccatccatgaattttcagtttcgtcctacaattcaa
gctccgcagtctgagcaagttgctcgcttgtcaactcagaattttcagtgtgttggcaga
ggtggaccaggtggtacaacgatgaacaatggatttccacctcaaccttatgcacctcag
ttattgcaatcaatgcaccattcgcttgaaaggcctagccaatcaaatcaggtgcaacat
gcgccactaggacccccgactcgaatttcacaaccaaatgtgccaattgcttctggtacc
tccttgcctcagccttacgcacaaactccagatattagtatgagtggctttggtggccct
agggcactcttttcttatccgagtggcacatcctatgaaaccttgagggcaccaactcaa
gtcattggaccaaacagtcatggtcaggcacaaccaagagcatctatcagccagactgct
gcgctatcttctatcatgattcccacatttgaacaaccgaaggcagctttatttcaacct
ataccttctcaagtgactgtgatagattgggttgagcatacctcggcggatggaaggaga
tattttttcaataagaggacaaagcagtccacttgggcgaagcctgttgagttgatgact
ctttttgagagagcagatgcaagaactgactggaaagaacattcaagtcctgatggaaga
aagtattactacaataaggttactaagcaatcaacatggacaatgcccgaggagatgaag
attgctcgtgaacaagcagaaaaagcatctgttcaagggcttcatgcagaaggcattatt
ggtgcttctcaggtgccatctcgttctgatacagcatcgcctgcagctccgactggttta
ccaagccaaacttcatctacactttcaacctctgatatcagtgagaaactagctcctact
tctgattggaagcaggcagcttcagtttctgaaagttctcctccggtcgaaaatgttgat
cgagttcagacaattgcagataaaacgtcacaagtgtgtgatactgcaaaaactgctgat
cattctgctactctgacgataacttctgctgctacattggtggaagaggatacagtatca
gttgaaaacagtggaggttcagatgacatgtcagctaaaaacacaaatcaaggtagtggg
actggaccagaagaaagccagaaacatgtggtggaaagtgaaagagttgacagtcaattg
gaagaaaaacaaattcatcaagagaatttttcttataacaacaaatcggaagctgtggat
gtcttcaaataccttttgaaatccgtcaatgttggatctgactggacatgggaacaggcc
atgagagaaataattaatgacagaagatacggggttctgaggactcttggagagcgtaag
caagccttcaatgagttcttagttcaaatgaaaagagcagcagaggaggaaaaggtagcc
agacagaaaaaacggtatgaagatttcagaaggatgttagaggaatgcctggagctgact
ccttctacgcggtggagcaaggctgtgactatgttggaagacgatgaacgtttcaaagat
gttgaacgagaaaaagaccgtcgtaatatttttgaagatcatattactgacctaaaggag
aaggagcgggtgaaagctctcgaggatcgcaagcggaacataactgaatacaggagattt
ttggaatcttgcaatttcatcaagcctaatagtcaatggcgcaaagttcaggaccgctta
gaagtggatgaaagatgttcacgtcttgagaaaattgaccagctagaaatctttcaggag
tatctgcgcgatctggagagagaagaagaggagaaaaagaagatacaaaaggaggaacaa
aaaaaggcagagcgaaagcatcgtgatgagttccgtggcctgatagatgaacatattgca
aaaggagagcttactgccaaaactagttggcgtgattatctaaccaaggtcagagattta
cccgtatattcagcaattgcatcaaactcctctggagctactccaaaagacttatttgaa
gacgctgttgaggatttgaaaagaaagtaccatgacctcaaatctcagataaaggacgta
ttgaagctgagaaaggtaacaatacacgctggatcaacatttgatgagttcaaggtctca
attcccgagggtatcggtttcccacctattcctgactgtaaactgaagttagtttttgat
gatttgctggaaagggcgaaggagaaggaagagaaggaagccagaaaacagacacggcat
actgaaaaattggtggatatgcttcgctccttcaaggagataactgcctcttcatcctgg
gaggaatcaaagcatcttgttgaaggtagtgaaaaattccgtactataggagatgagagc
ttccggaagcagacattcgaggattacgtatcacacctcaaagagcaagcaaaaaggatc
aaacagaacaagaaggtacacgaaaatgtgaaagaggaacatgacaaggggaaggataaa
caccgaagagagaaggacagagtgcgagaaagagacagtgaagatcatcataagagaggt
gcagccgatagttacaaccatgatatgaatgaaccccatgggaaagaacgtagaagatca
ggaagagataaccattatagacatcgagaaagacatactagtttgaaggaagatgcgaca
gaccattacaaagaatcccataaacctgtacctggtggtggccacaagaaatcaagacaa
caggtacacttcgtagaatcccgtgaacgtagagtaatatttttgtttaggttttga

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