KEGG   Eutrema salsugineum (saltwater cress): EUTSA_v10021732mg
Entry
EUTSA_v10021732mg CDS       T02985                                 
Name
(RefSeq) hypothetical protein
  KO
K12623  U6 snRNA-associated Sm-like protein LSm4
Organism
eus  Eutrema salsugineum (saltwater cress)
Pathway
eus03018  RNA degradation
eus03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:eus00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    EUTSA_v10021732mg
  09123 Folding, sorting and degradation
   03018 RNA degradation
    EUTSA_v10021732mg
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:eus03019]
    EUTSA_v10021732mg
   03041 Spliceosome [BR:eus03041]
    EUTSA_v10021732mg
Messenger RNA biogenesis [BR:eus03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     EUTSA_v10021732mg
  mRNA degradation factors
   5'-3' decay
    Lsm complex
     EUTSA_v10021732mg
Spliceosome [BR:eus03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   LSm proteins
    EUTSA_v10021732mg
SSDB
Motif
Pfam: LSM SM-ATX
Other DBs
NCBI-GeneID: 18024028
NCBI-ProteinID: XP_006408062
UniProt: V4LGA3
LinkDB
Position
Unknown
AA seq 138 aa
MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECY
IRGNTIKYLRVPDEVIDKVQEEKTRTDRKPPGVGRGRGREGPKGMGRGGMDDGAARGRGR
GGSIGKMGGNKVGGRGRG
NT seq 417 nt   +upstreamnt  +downstreamnt
atgcttcctctttcgctgcttaagactgctcaagggcatcccatgcttgtagagctcaag
aatggggagacatataatgggcacttggtgaattgtgatacatggatgaacattcatctg
cgtgaagtcatctgtacatcaaaggatggagataggttttggcgaatgcctgaatgttat
atccgaggcaacacaatcaagtatctccgagttccagatgaggtgattgataaagtacag
gaggagaagacccgcacagatagaaaaccaccaggggttggaagaggaagagggcgagaa
ggtccaaagggtatgggacgtggtggtatggacgatggagctgccaggggccgaggccga
ggaggatcaattggaaagatgggtggcaacaaagtgggaggtcgaggccgtggttga

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