Eutrema salsugineum (saltwater cress): EUTSA_v10022534mg
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Entry
EUTSA_v10022534mg CDS
T02985
Name
(RefSeq) hypothetical protein
KO
K12585
exosome complex exonuclease DIS3/RRP44 [EC:3.1.13.-]
Organism
eus
Eutrema salsugineum (saltwater cress)
Pathway
eus03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
eus00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
EUTSA_v10022534mg
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
eus03019
]
EUTSA_v10022534mg
Messenger RNA biogenesis [BR:
eus03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Exosome cofactors
EUTSA_v10022534mg
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNB
PIN_4
OB_Dis3
Rrp44_CSD1
OB_HELZ2
Rrp44_S1
CSD2
OB_RNB
Toxin_R_bind_C
Motif
Other DBs
NCBI-GeneID:
18026086
NCBI-ProteinID:
XP_006409299
UniProt:
V4M6U5
LinkDB
All DBs
Position
Unknown
AA seq
933 aa
AA seq
DB search
MLQSKVFNKKTRGGRIQKQVREVYLRDDIYCGAFSCKSCDTSAARLSSPKIIVVDTNVVL
HQIDLLENQAIDSVVVLSVVLDEVKNRNRSVYNRIRALCSNPARQFYVFSNHVHKDTYVQ
AMERETANDHNDRAIRVATLWYQKHLGDSSQVLLVTNDRENKRKATEEGISAETIEAYVK
SIGQPELLDLLAQPTTEDVTMEDADDSRPSKRKLVYLEHKPMSEITAGLHRGIYHQGKLR
VNRFNPFEAYVGSESIGEEIIIYGRSNMNRAFDGDIVAVELLPRDQWQEEKALSIAEEDE
EEDDTVHLAPNTADDAPRTSNLPQETSGDKNAIPARPSGRVVGIIRRNWHSYCGSLEPMS
LPAGSGGTAHALFVSKDRRIPKIRINTRQLQNLLDMRIVVAVDSWDRQSRYPSGHYVRPI
GKIGDRETETEVVLIENDVDYSPFTSQVLACLPPLPWSVSPEDVSNPVRQDLRHLLVFSV
DPPGCKDIDDALHCTSLPNGNFELGVHIADVTNFVHPGTPLDDEASKRGTSVYLVERRID
MLPKPLTEDICSLRADVERLAFSVIWEMNPEAEIISTRFTKSIIKSSAALSYVEAQARMD
DSRLTDSVTTDLRNMNTLAKIMRQRRIDRGALTLASAEVKFQIDTETHDPLDIGMYQIRE
ANQMVEEFMLAANVSVAEQILKHFPSCSLLRRHPTPTREMLEPLLRTAAAIGLNLDVSSS
KALADSLDRAVGEDPYFNKLIRILATRCMTQAVYFCSGDLTPPEYLHYGLAAPLYTHFTS
PIRRYADVFVHRLLAASLGIYKLPTVFQDRPQLTSVADNLNYRHRNAQMASRASVELHTL
IYFRNRPTDAEARVVKIRSNGFIVFVPKYGIEGPVYLTAKGEKGAGDWYVDEEKQKIVKM
DGSLSYSVLQTVKIHMEVVEPQPNRPKLQLTLL
NT seq
2802 nt
NT seq
+upstream
nt +downstream
nt
atgttgcagagcaaagttttcaataagaaaacaagaggagggcgaattcaaaagcaagtg
agagaggtttatctacgagatgacatatactgtggagctttttcttgcaagtcttgcgat
acttcagctgctcgcttgtcttctcctaagattattgttgtggacaccaacgtcgttctt
caccaaattgatctgttggagaatcaggccatagacagtgttgttgttctgtctgttgtc
ctggacgaggttaagaacaggaatagatctgtttacaataggatcagagctctatgcagc
aatccagcgagacaattctatgttttctctaatcatgtccacaaggacacttatgtgcag
gccatggagagagagactgccaatgaccacaacgatagagctattcgggtcgctacgcta
tggtaccagaagcatctaggggattcatctcaggtgttgcttgtaactaatgacagggaa
aataaacggaaggccactgaggagggaatatctgcagagacaattgaggcttatgtaaaa
tcaattggacaacctgaattgctggatctgcttgcgcaaccaaccactgaagacgtaacc
atggaagatgcagatgattccagaccttcaaagaggaagcttgtatacctagagcataag
cccatgtctgagattactgctggcctacaccgtggaatatatcatcaaggaaaactccgt
gtcaatcgtttcaatccttttgaagcttatgttggaagcgagagcattggcgaggagata
attatctatgggcgcagtaacatgaacagggctttcgatggtgatattgttgctgtagaa
ctcttgcctcgcgatcaatggcaagaggagaaggcattatctatagctgaagaagatgag
gaagaggacgatactgttcatttggctcccaacactgctgacgatgctcctagaacctca
aatttgccccaagaaacttctggggataaaaatgctatccctgctcgtccttcaggccgt
gtagtcggtattatccgtagaaattggcattcgtattgtggatctcttgaaccaatgtca
ctacctgctggtagtggtggaacggcgcatgctttatttgtttctaaagatcgcagaatt
cccaagattcgcattaatactcgacagcttcagaaccttttggatatgaggatagtagtg
gcagttgattcttgggaccgtcaatctcgatatccttctggccattatgtccgaccaatc
gggaaaataggtgacagggaaactgaaacagaggttgtcttgatagagaacgatgttgac
tactcgccattcacttctcaagttctggcatgcttgccacccttaccctggtctgtatct
cctgaagatgtatccaatcctgttaggcaagatttacgacatttgcttgtctttagtgtg
gatcctcctggttgcaaggatattgatgatgcattgcattgtacatcacttccaaacggg
aactttgagcttggagtccacattgcggatgtaacaaattttgttcaccctggtactcct
ttggatgatgaggcatcaaaaagaggcacatctgtctaccttgttgagcgccgtattgac
atgcttcccaagcctctaacagaagatatttgctcgcttagagctgatgtggaaaggctt
gcattctcggttatttgggaaatgaaccctgaagctgagattatttcaacgagatttaca
aagagcataatcaagtcttctgcagcattgtcctatgttgaagctcaggctcggatggat
gacagccgattgacggactcggtgactacagatcttaggaacatgaatactttggcaaag
ataatgaggcaaaggcgtattgataggggagccttaactcttgcttctgccgaagttaaa
tttcagattgataccgagactcatgatcctcttgacattggcatgtatcagattcgagaa
gcaaaccaaatggttgaagaattcatgcttgctgcaaatgtttcagtcgctgaacaaata
cttaaacatttcccttcttgctcactattaaggcgtcatcccactccaacaagagaaatg
cttgaaccgctgttgcgtactgctgcagctattgggcttaacttggatgtttcttcatct
aaagctctggctgattcactggaccgagctgtgggtgaggatccatatttcaataagctt
atcaggatattggcaactaggtgcatgacacaggccgtgtacttttgtagtggggatctc
actcctccagaataccttcattatgggcttgcagcacctttatatactcattttacgtcc
cctatccggagatatgctgatgtctttgtgcacagattacttgccgcgtcattaggaata
tacaagcttccaacggtgtttcaagacagacctcaacttactagtgttgctgataatttg
aactatcggcataggaatgcccagatggcaagtcgagcttcagtagagctgcacacactc
atctacttcagaaaccgacccacggatgcagaggcgagagttgtgaagataagatcaaac
ggttttatagtattcgtcccaaagtatggaatcgaaggccctgtttatttaacagcaaaa
ggtgagaaaggagccggtgactggtacgtagacgaggagaagcagaagattgttaagatg
gatggaagtttatcttatagtgtcttgcaaacagtgaagattcacatggaggtagttgag
cctcagcctaatcgaccgaaactccaactcactcttttataa
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