KEGG   Eutrema salsugineum (saltwater cress): EUTSA_v10022653mg
Entry
EUTSA_v10022653mg CDS       T02985                                 
Name
(RefSeq) hypothetical protein
  KO
K10752  histone-binding protein RBBP4
Organism
eus  Eutrema salsugineum (saltwater cress)
Pathway
eus03082  ATP-dependent chromatin remodeling
eus03083  Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:eus00001]
 09120 Genetic Information Processing
  09126 Chromosome
   03082 ATP-dependent chromatin remodeling
    EUTSA_v10022653mg
   03083 Polycomb repressive complex
    EUTSA_v10022653mg
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03036 Chromosome and associated proteins [BR:eus03036]
    EUTSA_v10022653mg
Chromosome and associated proteins [BR:eus03036]
 Eukaryotic type
  Nucleosome assembly factors
   Histone chaperones
    CAF-1
     EUTSA_v10022653mg
  Histone modification proteins
   HAT complexes
    HATB complex
     EUTSA_v10022653mg
   HDAC complexes
    Sin3A-HDAC complex
     EUTSA_v10022653mg
   Polycomb repressive complex (PRC) and associated proteins
    PRC2.1
     EUTSA_v10022653mg
    PRC2.2
     EUTSA_v10022653mg
  Centromeric chromatin formation proteins
   Kinetochore proteins
    MIS16-MIS18 complex
     EUTSA_v10022653mg
  Heterochromatin formation proteins
   Other heterochromatin formation proteins
    EUTSA_v10022653mg
  Chromatin remodeling factors
   NuRD complex
    EUTSA_v10022653mg
   NuRF complex
    EUTSA_v10022653mg
   NuRF complex (fruit fly)
    EUTSA_v10022653mg
SSDB
Motif
Pfam: WD40 WD40_CDC20-Fz CAF1C_H4-bd WD40_Prp19 Beta-prop_EML_2 Beta-prop_EIPR1 Beta-prop_TEP1_2nd Beta-prop_CAF1B_HIR1 WD40_WDHD1_1st Beta-prop_RIG_2nd Beta-prop_EML WDR55 Beta-prop_DCAF12 EIF3I Beta-prop_WDR90_POC16_2nd WD40_MABP1-WDR62_2nd Beta-prop_IFT122_1st Beta-prop_WDR35_TULP_N WD40_RFWD3 eIF2A Beta-prop_SPT8 Beta-prop_TEP1_C Beta-prop_WDR19_1st ANAPC4_WD40 Ice_binding Beta-prop_SCAP
Other DBs
NCBI-GeneID: 18025890
NCBI-ProteinID: XP_006409039
UniProt: V4M6A0
LinkDB
Position
Unknown
AA seq 510 aa
MESDEAAAAASPQGTTASGGTVTPGPKKRGRKPKSKEDSQTPSSQQQSGSSGGKMKESGK
KTQQPSVDEKYSQWKGLVPILYDWLANHNLVWPSLSCRWGPQLEQATYKNRQRLYLSEQT
DGSVPNTLVIANCEVVKPRVAAAEHISQFNEEARSPFVKKYKTIIHPGEVNRIRELPQNS
KIVATHTDSPDVLIWDVETQPNRHAVLGAANSRPDLILTGHQDNAEFALAMCPTEPFVLS
GGKDKSVVLWSIQDHITTVGTDSKSSGSIIKQTGESGEKTESPTVGPRGVYVGHDDTVED
VAFSPTSAQEFCSVGDDSCLILWDARTGTSPVTKVEKAHDADLHCVDWNPHDDNLILTGS
ADNTVRLYDRRNLTANGVGTPIYKFEGHKAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYD
RVSKKSDRAAKSPAGLFFQHAGHRDKVVDFHWNASDPWTIVSVSDDCETTGGGGTLQIWR
MSDLIYRPQEEVLAELEKFKSHVMTCASKP
NT seq 1533 nt   +upstreamnt  +downstreamnt
atggagagcgacgaagcagcagcagcagcgtctcctcaaggcacgacggcgagcggagga
acggtaactccggggccgaagaagagaggccggaaacctaagagcaaggaagattctcag
actccgtcgtcgcagcaacagagcggtagcagcggtgggaaaatgaaggaaagtgggaag
aaaacgcagcagccgagtgtcgacgagaagtactctcagtggaaaggtctcgtccccatt
ctctacgactggctcgccaaccataacctcgtctggccttcactctcctgcagatggggt
ccacaactcgaacaagcaacctacaagaatcgccagcgtctgtacctctctgaacaaact
gatggcagtgtgcccaacactttagtcatagcgaactgcgaagttgttaagccaagggtc
gctgcagcagagcatatatctcagttcaatgaggaagcacgttctccatttgtgaagaag
tacaaaaccatcattcaccctggagaggttaacagaatcagagaactcccacagaacagc
aagatcgttgctactcacactgacagtcctgatgttctcatttgggatgttgaaacccaa
ccaaaccgtcatgctgtgcttggagctgcaaattcccgcccggatttgattctcactgga
caccaagataatgctgaatttgctctggcaatgtgcccaaccgaaccctttgtcctctct
ggaggcaaggacaagtcagttgttttgtggagcatccaggaccacatcacaacggttggt
acagattccaaatcatctggatctatcatcaaacagactggtgaaagtggtgaaaaaact
gagagtcctactgtcggtccgcgaggtgtatatgttggccatgacgatacggttgaagat
gtggcattcagcccgactagtgcacaagaattctgcagtgttggtgacgattcttgcctt
atactatgggatgcaagaactggcactagccctgtcacgaaggttgaaaaagcgcacgat
gctgatcttcattgtgtcgattggaatcctcatgacgacaatctgatcctgacagggtca
gcagacaacactgtccggctgtatgatcgtaggaacctgaccgcaaatggagtcggtacg
cctatttacaaatttgagggccacaaagctgctgtcctttgtgttcagtggtctcctgat
aagtcatctgtttttgggagttctgcagaagatggtctcttgaacatctgggattatgac
agggttagtaagaagtctgatcgtgcagctaaaagtcctgctgggctcttcttccagcat
gctggtcacagggacaaagtggttgatttccactggaacgcgtcggatccttggactatt
gtcagtgtttcggatgactgtgagactactggtggaggtggaacattgcagatatggcgg
atgagtgacttgatttacagaccacaagaggaagtcctggcagaattggagaagttcaag
tcgcatgttatgacatgtgcctccaagccttga

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