Eutrema salsugineum (saltwater cress): EUTSA_v10023236mg
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Entry
EUTSA_v10023236mg CDS
T02985
Name
(RefSeq) hypothetical protein
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
eus
Eutrema salsugineum (saltwater cress)
Pathway
eus03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
eus00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
EUTSA_v10023236mg
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
eus03019
]
EUTSA_v10023236mg
03041 Spliceosome [BR:
eus03041
]
EUTSA_v10023236mg
03009 Ribosome biogenesis [BR:
eus03009
]
EUTSA_v10023236mg
03016 Transfer RNA biogenesis [BR:
eus03016
]
EUTSA_v10023236mg
Enzymes [BR:
eus01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
EUTSA_v10023236mg
Messenger RNA biogenesis [BR:
eus03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
EUTSA_v10023236mg
Spliceosome [BR:
eus03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
EUTSA_v10023236mg
Complex C
U4/U6.U5 tri-SnRNP related factors
EUTSA_v10023236mg
Ribosome biogenesis [BR:
eus03009
]
Eukaryotic type
Pre-60S particles
Helicases
EUTSA_v10023236mg
Transfer RNA biogenesis [BR:
eus03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
EUTSA_v10023236mg
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DSHCT
MTR4_beta-barrel
DEAD
MTR4-like_stalk
ResIII
DEXQc_Suv3
Helicase_C
ATPase_2
nSTAND3
Motif
Other DBs
NCBI-GeneID:
18010095
NCBI-ProteinID:
XP_006392240
UniProt:
V4ME57
LinkDB
All DBs
Position
Unknown
AA seq
990 aa
AA seq
DB search
MGSVKRKSQDDSSDFAPPQKVHKEEDSTQIINEELVGCVHDVSFPENYVPLAPSAQGDNK
PPAKEFPFTLDSFQSEAIKCLDNGESVMVSAHTSAGKTVVASYAIAMSLREKQRVVYTSP
IKALSNQKYRDFKEEFSDVGLMTGDVTIDPNASCLVMTTEILRSMQYKGSEIMREVAWII
FDEVHYMRDSERGVVWEESIVMAPKNSRFVFLSATVPNAKEFADWVAKVHKQPCHIVYTD
YRPTPLQHYVFPAGGNGLYLVVDEKAKFHEDSFQKSLNALVPASDADKKKENGKSQKGLV
VGKLGEESDIFKLVKMIIQRQYDPVILFSFSKKECEALAMQMSKMDLNSDDEKDIVDTIF
TSAIDMLSDDDKKLPQVSNILPILKRGIGVHHSGLLPILKEVIEILFQEGLIKCLFATET
FSIGLNMPAKTVVFTNVRKFDGDKFRWLSSGEYIQMSGRAGRRGIDKRGICILMVDEKME
PAVAKSMLKGSADSLNSAFHLSYNMLLNQLRCEEGDPENLLRNSFFQFQADRAIPDLQKQ
IKSLEEERDSMVIEEEESLKNYYNLILQYKSLKKDIREIVFSPKYCLPFLLPNRAVCLDC
TNDDGEPQSFSIENQDAWGVIMKFSKVKSTSEDDDNRRPEDANYTVDVLTRCMVSKNGVG
KKKIKAVPFKERGEPTVVSVPLSQIKSLSSAIMNIPKDLLAVEARENALKKVSELLSRHP
DGIPLDPEVDMKIRSSSYKKTVRRLEALENLFEKHKIAKSPLIAEKLKVLHMKEELTAKI
KSLKKTVRSSTTLAFKDELKARKRVLRRLGYITSDNVVELKGKVACEISTAEELTLTELM
FSGVFKDAKVEELVSLLSCFVWRERLPDAAKPREELDLLFIQLQDTARRVAELQLDCKVQ
IDVERFVHSFRPDIMEAVYAWAKGSKFYEVMEIARVFEGSLIRAIRRMEEVLQQLIVAAK
SIGETQLEAKLEEAVSKIKRDIVFAASLYL
NT seq
2973 nt
NT seq
+upstream
nt +downstream
nt
atgggctcagtgaagagaaaatcgcaggatgattcttctgattttgctccgcctcagaag
gttcataaagaggaagattccactcagatcatcaacgaagagctcgtgggttgcgttcac
gatgtctctttccctgaaaattacgttcctcttgctccctccgctcaaggagataacaaa
ccaccggccaaagaattcccttttacactagactcttttcagtccgaagctatcaagtgt
ctcgataatggcgaatcagtaatggtttcagcacatacatctgctggtaaaacagttgtg
gcatcgtatgccattgctatgtctttgagggaaaagcagagagttgtttatacgtctcct
ataaaggcactcagcaatcaaaagtacagagatttcaaagaagagttttctgacgttggt
ttgatgactggggatgtgacaattgatcctaatgcctcttgcctggtcatgaccacagag
atcttgcgtagcatgcagtataaaggatcagagattatgcgggaggttgcctggattatt
tttgacgaggtgcattacatgcgtgatagcgaaagaggtgtggtttgggaagaaagtatt
gtaatggctccaaagaattctcgttttgtgtttctttctgcaactgtgcccaatgccaag
gagtttgctgattgggttgcaaaggttcacaaacaaccatgccacattgtttatactgat
tatcggccaactccgcttcagcattatgtctttcctgctggaggtaatgggctttacttg
gttgtggatgaaaaggctaaatttcacgaggatagcttccagaaatctcttaacgcgttg
gttcctgctagtgatgctgacaagaaaaaagagaatggaaaatctcaaaagggattagtt
gttggaaaacttggtgaagaaagtgatatcttcaaattggtgaaaatgataattcagcgg
caatatgatcccgtgattttgttcagtttcagcaaaaaggaatgcgaggcgcttgctatg
cagatgtctaagatggatttaaacagcgacgatgagaaagatattgtggacacaatcttt
acgagtgcaattgatatgctttcagatgatgataagaagctacctcaggtgtcaaatatt
ttacccatcttaaaacgtggtataggcgttcatcattcgggtctccttccaattttgaaa
gaagtaattgagatattatttcaagaaggtctgattaagtgtttgtttgcaacagagaca
tttagtattggattgaacatgccggcaaagacggttgtgtttacaaatgtacgcaaattt
gatggagacaagtttcggtggctatctagtggagagtacattcagatgagtggtcgtgct
ggacgtcgaggtattgacaaacgaggtatatgcatcctcatggttgatgagaagatggaa
cccgctgttgctaaatcaatgctcaaaggaagtgctgattctttgaacagtgccttccat
ttgagctataacatgcttctaaatcagttgcgatgtgaagaaggtgatcctgagaatctt
ctccgcaactctttctttcagtttcaagctgaccgtgctatacctgatcttcagaagcaa
ataaaatcactggaagaagagagagactctatggtgattgaagaagaagaaagcttaaaa
aattactataacctgattttgcaatataagagtctgaagaaagatatacgtgaaatcgtg
ttctctccgaagtactgcttaccctttttgctgccaaacagagctgtttgtctcgattgc
acaaatgatgatggagagccacaatcattcagcattgaaaaccaggatgcgtggggagtg
ataatgaaatttagcaaagtcaaaagcacatctgaagatgatgacaatagaagaccagaa
gatgcaaactacacagtagatgtactgactagatgtatggtcagcaaaaatggcgttggc
aaaaagaaaattaaggccgtgccatttaaggagcgtggtgaacctactgtggtctctgtt
cctttatctcagattaagagtttaagcagtgcaatcatgaatataccaaaagatctttta
gcagtagaagctcgagagaatgctctgaagaaggtttctgagttgctttctagacatccc
gatggtataccccttgatcctgaagttgatatgaagattcggagcagctcttacaaaaag
acagttcgtagactggaggctctggaaaacctgtttgaaaaacacaaaattgcaaaatct
cccctcatagcagagaagctaaaagttttacacatgaaggaagaactaacagccaagatc
aaatcacttaagaaaactgtccgatcctcgacaacattggcgtttaaagatgaactgaag
gccagaaaacgtgttttacgaaggctaggatacatcacaagcgataatgtcgtggagttg
aaggggaaggttgcatgtgaaatcagtaccgcagaagaattgacattaacggagctaatg
ttcagtggtgtcttcaaggatgcaaaagtagaggagttggtttctctcctctcttgcttt
gtgtggcgagagagactccctgacgctgctaaacccagagaagaactcgacttgctcttc
atacagttacaagacacggcgaggcgtgtcgctgaacttcagcttgactgcaaggtccaa
atcgatgtggagaggtttgtgcattcgttcagaccggatatcatggaggccgtgtatgcg
tgggcaaaagggtcgaagttctatgaggtcatggagattgctcgtgttttcgaagggagc
ttgatcagagcgataaggagaatggaggaagttctgcaacagctcatagtagctgcaaaa
tccattggagaaacacagcttgaagctaaactagaagaagctgtttccaagatcaagaga
gacattgtattcgcagcctctctctacttgtga
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