Eutrema salsugineum (saltwater cress): EUTSA_v10024193mg Help Entry EUTSA_v10024193mg CDS       T02985                                  Name (RefSeq) hypothetical protein   KO K03006   DNA-directed RNA polymerase II subunit RPB1 [EC:2.7.7.6] Organism eus  Eutrema salsugineum (saltwater cress) Pathway eus03020   RNA polymerase eus03420   Nucleotide excision repair Brite KEGG Orthology (KO) [BR:eus00001]  09120 Genetic Information Processing   09121 Transcription    03020 RNA polymerase     EUTSA_v10024193mg   09124 Replication and repair    03420 Nucleotide excision repair     EUTSA_v10024193mg  09180 Brite Hierarchies   09182 Protein families: genetic information processing    03021 Transcription machinery [BR:eus03021]     EUTSA_v10024193mg    03400 DNA repair and recombination proteins [BR:eus03400]     EUTSA_v10024193mg Enzymes [BR:eus01000]  2. Transferases   2.7  Transferring phosphorus-containing groups    2.7.7  Nucleotidyltransferases     2.7.7.6  DNA-directed RNA polymerase      EUTSA_v10024193mg Transcription machinery [BR:eus03021]  Eukaryotic type   RNA polymerase II system    RNA polymerase II     Core subunits      EUTSA_v10024193mg DNA repair and recombination proteins [BR:eus03400]  Eukaryotic type   SSBR (single strand breaks repair)    NER (nucleotide excision repair)     TCR (transcription coupled repair) factors      DNA-directed RNA polymerase II complex       EUTSA_v10024193mg BRITE hierarchy SSDB OrthologParalogGFIT Motif Pfam:  RNA_pol_Rpb1_1 RNA_pol_Rpb1_5 RNA_pol_Rpb1_6 RNA_pol_Rpb1_2 RNA_pol_Rpb1_7 RNA_pol_Rpb1_3 RNA_pol_Rpb1_4 RNA_pol_Rpb1_R Motif Other DBs NCBI-GeneID:  18028247 NCBI-ProteinID:  XP_006412058 UniProt:  V4P2F5 LinkDB All DBs Position Unknown AA seq 1837 aa AA seqDB search MDTRFPFSPAEVSKVRVVQFGILSPDEIRQMSVIHVEHSETTEKGKPKVGGLSDIRLGTI DRKVKCETCMANMAECPGHFGHLELAKPMFHVGFMKTVLSIMRCVCFNCSKILADEEDHK FKQAMKIKNPKNRLKKILDACKNKTKCEGGDEIDDVQNQDTDEPVKKSRGGCGAQQPKLT IEGMKMTAEYKITRKKTDEPDQLPEPAERKQTLGADRVLSVLKRISDEDCQLLGFNPKYA RPDWMILEVLPIPPPPVRPSVMMDATSRSEDDLTHQLAMIIRHNENLKRQEKNGAPAHII SEFTQLLQFHIATYFDNELPGQPRATQKSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSA RTVITPDPTINIDELGVPWSIALNLTYPETVTPYNIERLKELVDYGPHPPPGKTGAKYII RDDGQRLDLRYLKKSSDHHLELGYKVERHLIDGDFVLFNRQPSLHKMSIMGHRIRIMPYS TFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQANRPVMGIVQD TLLGCRKITKRDTFIEKDVFMNTLMWWEDFDGKVPAPAILKPRPLWTGKQVFNLIIPKQI NLFRYSAWHSDQETGFITPGDTQVRIERGELLAGTLCKKTLGTGNGSLVHVIWEEVGPDA ARKFLGHTQWLVNYWLLQNGFTIGIGDTIADSSTMEKINETISNAKTAVKDLIRQFQEKK LDPEPGRTMTETFENRVNQVLNKARDDAGSSAQKSLAETNNLKAMVTAGSKGSFINISQM TACVGQQNVEGKRIPFGFDGRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGR EGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQ KLDSLKMKKSEFDRTFKYEIDDENWNPTYLSDEHLEDLKGIRELRDVFDAEYQKLEADRY QLGTEIATNGDSTWPLPVNIKRHIWNAQKTFKIDLRKISDMHPVEIVDAVDKLQERLLVV PGDDALSVEAQKNATLFFNILLRSTLASKRVLEEYKLSREAFEWVIGEIESRFLQSLVAP GEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKRIKTPSLSVYL TPEASKSKEGAKTVQCALEYTTLRSVTQATEVWYDPDPMSTIIEEDFEFVRSYYEMPDED VSPDKISPWLLRIELNREMMVDKKLSMADIAGKINLEFDDDLTCIFNDDNAQKLILRIRI MNDEGAKGEAQDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKQVRKSRFDEEGGFK TSEEWMLDTEGVNLLAVMCHEDVDPKRTTSNHLIEIIEVLGIEAVRRALLDELRVVISFD GSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPLMRCSFEETVDILLDAAAYAETD CLRGVTENIMLGQLAPIGTGDCELYLNDEMLKNAIELQLPSYMDGLEFGMTPARSPSGTP YHEGMMSPNYLLSPNMRLSPMSDAQFSPYVGGMAFSPTSSPGYSLSSPGYSPTSPGYSPT SPGYSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSY SPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTS PSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPSYGPTSPSYNPQSAKYSPSLAYSP SNARLSPASPYSPTSPNYSPTSPSYSPTSPSYSPSSPTYSPSSPYSSGASPDYSPSAGYS PTLPGYSPSSTGQYTPHEGDKNDKSGKDGNKDDKSNP NT seq 5514 nt NT seq  +upstreamnt  +downstreamnt atggatacgcggtttccgttctctccagccgaggtctccaaggtccgggtggtccagttt ggcatactcagccccgatgagatcaggcaaatgtcagttatacacgttgagcatagtgag accaccgagaagggtaaacctaaggtgggaggattgagcgatattcggcttggtacgatt gatcggaaggtgaagtgtgagacatgtatggctaacatggccgagtgtccagggcatttt ggccatcttgagctcgctaagccaatgtttcatgtcggttttatgaagactgtcttgagt atcatgcgatgtgtttgcttcaattgctccaagattttagctgatgaggaggaccataag tttaagcaggctatgaagataaagaatcccaagaataggcttaagaagattctggatgcc tgcaaaaacaagaccaaatgtgaaggtggtgatgaaattgacgatgtccaaaaccaagac acagacgaaccagttaaaaaaagccgtggtggatgtggtgcacagcaaccaaagctgact attgagggcatgaagatgactgcagagtataaaataacaaggaagaaaaccgatgagccg gaccagcttccggagcccgcagaaaggaaacagacactcggtgctgatagggttttgagt gtgctgaagaggattagtgacgaggattgtcagctcttagggttcaaccctaagtatgct cgtcctgactggatgattctagaagtccttcctattcctccaccccctgtcagaccatct gtaatgatggatgccacttccagaagtgaggatgacttgactcatcagctagccatgatt attcgacacaatgaaaacttgaaaagacaggaaaaaaatggagcaccagctcatattatt tcagagtttacacaactcttgcagtttcatatagccacatattttgataatgagttgcct ggacagccaagggctacacaaaaatcagggaggcctattaaatcaatatgtagtaggctg aaggcgaaggaaggcagaatcagggggaatttgatgggaaaacgagttgatttctcagct cgtactgttattactccagatccaacaataaatatcgatgaacttggtgtaccgtggagt attgctttgaatctcacatacccagaaacagttactccatataacattgaaagattaaag gagctcgttgattatgggccacatcctccacctggcaagactggggcgaaatatattatt cgggatgatggccaaaggctagatcttcggtaccttaagaagagcagtgatcatcatttg gaacttggatacaaagtggaacggcacttaattgatggtgattttgttctgtttaatcgt caaccaagtctgcacaaaatgtctatcatgggtcacaggattaggatcatgccatattcc actttccgtctgaatttgtctgtcacctctccttacaatgccgattttgatggggatgag atgaacatgcatgtaccacaatcatttgagaccagagccgaggtgttagagctgatgatg gttcctaaatgtatcgtctctccccaggcgaataggcctgtgatgggtattgtgcaggat accctcctaggatgccgtaaaattacaaagagagacaccttcatagagaaggatgtattc atgaatacacttatgtggtgggaggacttcgacgggaaagttccagctcctgcaattttg aagccgcgtcctctttggactggcaaacaagtctttaatctcatcataccaaagcagata aatctgttcaggtactctgcttggcactcggatcaagagactggattcataactccaggg gatactcaagtgcgaattgaaagaggggaacttcttgccggaactctctgcaaaaagacc cttggtaccggtaatggaagtctcgtgcatgtcatttgggaagaggttggtcctgatgca gctaggaaattcctcggtcatactcaatggcttgtcaactactggcttctgcagaatggt tttaccattggaattggtgacacaattgctgattcgtcaacaatggagaaaattaatgaa actatttctaatgcgaaaactgctgtgaaggaccttatccgtcagttccaggaaaagaaa ttggaccctgaaccggggcgaactatgacagagacatttgagaacagggttaatcaggtc ttgaataaagctcgtgacgatgctggaagtagtgctcaaaagagtctagcagaaaccaac aaccttaaggccatggtgacagcaggatccaaaggaagtttcattaatatatctcaaatg acagcgtgtgttggtcagcaaaatgtagaagggaagcggatcccatttggatttgatggg cggacattgcctcatttcaccaaagatgattatggtcctgaaagtcgtggctttgttgag aattcgtacctacgtgggttgactccccaagagttctttttccacgcaatgggtggaagg gaaggtcttattgatactgctgtgaagacatcagaaactggatacattcaaaggcgattg gttaaggctatggaggatattatggtaaaatatgatgggacagtcagaaactcgttgggt gatgttatccaatttctttatggggaagatggtatggatgctgtatggatagaatcacag aagctggattccttaaagatgaagaaatccgagttcgataggactttcaagtatgagatt gacgacgaaaactggaatcctacatacctaagtgatgaacatcttgaggacttgaaaggg atccgggagttgcgtgatgtatttgatgcggaatatcagaaacttgaggctgacagatac cagctcgggactgaaattgcaacaaatggtgatagcacttggccattgcctgttaacatc aagaggcatatctggaatgcccagaagactttcaagattgacttgcgcaagatttcggat atgcaccctgttgaaattgttgatgctgttgataaactacaggagaggctgttggttgtt cccggtgatgatgccttgagtgtggaagcacagaagaatgccactctgttcttcaacatt ttgcttcgcagcactcttgctagtaaaagagttttggaggaatacaagctcagccgcgag gcttttgagtgggtcattggtgagatagaatcgagatttttacagtcgctggtagccccc ggggaaatgatcggttgcgttgctgctcaatcaattggagagcctgctacgcagatgact ctgaacactttccattatgctggtgtcagtgcaaagaatgttacgctcggtgttcccagg ttgcgagaaattattaatgttgccaaaaggatcaaaacaccttccctatctgtctacctc acaccagaagctagcaaatcaaaagagggggctaagactgttcagtgtgcgctggagtac actactctcagaagtgtcactcaagctacggaggtctggtatgacccagatccgatgagt actattattgaagaagattttgaatttgtgaggtcctactatgaaatgccagatgaagat gtttctccggataaaatatctccttggctgcttcgtatagagttgaatcgtgagatgatg gttgataagaaattgagtatggctgatattgcggggaagatcaaccttgagtttgatgat gacctgacttgcatattcaatgatgacaatgctcaaaaactgatccttcgaatccgcatt atgaacgacgaaggagcgaagggagaagcgcaagatgaatcagctgaagatgatgttttc cttaaaaagattgagagcaacatgctgacagaaatggcgctcagaggtattccagacatc aataaggttttcatcaagcaggttagaaaaagcaggtttgatgaggagggaggattcaag acatctgaggagtggatgttagatactgaaggtgttaatctcttagctgttatgtgccat gaagatgtggatccaaagaggacaacaagcaatcacttgattgaaattattgaagttctc ggtattgaggcagttcgtcgtgctttgttggatgaactgcgtgttgtgatttcttttgat ggctcctatgtgaattaccgacatcttgccatcttgtgtgataccatgacctatcgtggt catctaatggctatcactcgacatggtatcaatagaaacgacactgggcctctgatgaga tgctcttttgaagaaacggttgatattctgttggatgctgcagcttatgctgagacagac tgcttacggggtgttacagagaatataatgcttggccaactcgcacctattgggacagga gactgtgaactgtatctgaatgacgagatgctgaagaatgcgattgaacttcagctccct agctatatggatggtctagagtttggaatgactcctgctcgttcaccttcaggcactcct tatcatgaaggcatgatgtccccaaactatctcctcagtccaaatatgcgtttatcgcca atgtcagatgcacagttctctccatatgttggtgggatggccttttcgcccacttcatct ccaggctacagcctatcatcccctggatacagtcctacttctcccggttacagtcccact tcacctggatatagcccgacttctcccggttatagtcccacttcaccaacctacagcccc agttctcctggctatagcccaacaagccctgcttattctcctacaagtccttcctattct cccacctctcctagctacagcccaacatctccaagctatagcccaacgtccccgagctac agcccgacatcaccgagctacagccccacttctccgagttacagcccgacatcgcctgct tatagcccgacctcgcccgcgtatagcccgacttcacctgcatacagcccgacctctcct tcttacagcccaacatcaccatcttacagcccaacatcaccttcttacagtcctacttca ccctcctacagtcccacttcaccttcttacagtcctacttcacccgcatacagccctacg tctcctggctacagcccaacttcaccaagctacagcccaacatcacctagttacggtcct acgtctccaagctacaaccctcagtctgctaaatacagcccatctctggcttactctcct agcaatgcaagactatcgccagctagcccctacagtcctacatctccaaattacagcccg acatcaccatcctactcacccacatctccatcttattcaccttcaagtccaacatacagt cctagcagcccatacagctcaggagcaagccctgactacagcccaagcgcaggttactcg ccaacactacctggttattcaccgtcatctacgggacagtatacaccacatgagggtgat aaaaatgacaagagtggaaaagatggcaataaggatgataaaagcaacccttga

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