KEGG   Eutrema salsugineum (saltwater cress): EUTSA_v10024248mg
Entry
EUTSA_v10024248mg CDS       T02985                                 
Name
(RefSeq) hypothetical protein
  KO
K12828  splicing factor 3B subunit 1
Organism
eus  Eutrema salsugineum (saltwater cress)
Pathway
eus03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:eus00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    EUTSA_v10024248mg
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:eus03041]
    EUTSA_v10024248mg
   03036 Chromosome and associated proteins [BR:eus03036]
    EUTSA_v10024248mg
Spliceosome [BR:eus03041]
 Complex A
  U2 snRNP components
   U2 snRNP specific factors
    EUTSA_v10024248mg
 Complex B
    EUTSA_v10024248mg
 Complex C
   U2 SnRNP specific factors
    EUTSA_v10024248mg
Chromosome and associated proteins [BR:eus03036]
 Eukaryotic type
  Chromatin remodeling factors
   B-WICH complex
    EUTSA_v10024248mg
SSDB
Motif
Pfam: SF3b1 PPP2R1A-like_HEAT HEAT HEAT_EZ TOR1L1_N HEAT_ECM29 HEAT_EF3_N Cnd1 XMAP215_CLASP_TOG Vac14_Fab1_bd ParcG UME HEAT_Maestro Htt_N-HEAT_1
Other DBs
NCBI-GeneID: 18029355
NCBI-ProteinID: XP_006414720
UniProt: V4MSC1
LinkDB
Position
Unknown
AA seq 1197 aa
MVELDREITKTQEGTRKMQADIAASLKFDPYGDNDRDSYLTSIAPNDEEEEEETTTGGSL
VAKRLASYTAPKSILNDVARSHEDDDNGGGFKRRQTIAEREGEYKNRRLNRVLSPDRIDP
FAMGEKTPDPSVRTYTDHMRETALQREREETMRLIAKKKKEEEAAKKQSDSAPSSSSSSK
RRHSCEEDGASPPAKKAKSSTSDWDLPDATPGRVSIGRRNRWDETPTPSRVTDSDGTPSG
VTPWEAATPKGLKRQRSRWDETPASMASAAATPMAGVAYTPGVTPAGGIGMATPTPGQLN
LLGFMTPEQYNMQERNRVLSDEELDAMFPTKGYKVLNPPDSYVPIRTPAKKILGTPTPMA
TPGYVIPEEIRGQHYDVPPEVPGGLPFMKAEDQQYFEALLKEVNEEELSPDELKERKIMK
LLLKVKNGDPEQRKKALRQISNKAREYGAGPLFNKILPLLMQPTLEDQERRFLVKVIERV
MLKLDELVRPFVHKILVVIQPMLIDGDYIARITGREVISNLSKAAGLATMIANMRPDLDH
VDEYVRNSTARAFGVVASALGIPKLLPFLKAVCQSKKSWEARHTGIKIVQQIAILISCAV
LPHLKSLVELIEHGLSDENPKVRTITALSLAALAEAAAPYGIESFDSVLKPLWKGIRSHH
GKRLAAFLKAIGCIIPLMDAMYASYYTKEVMVVLIREFQSPDEDMKVIVLKVVKQCVSTE
GVESDYIRSDVLSAFFDYLWVRRMALNRRSSKHLVETTVEIANKVGVADIVGRLVEDLKD
ESEPYRRMVMETIDKVVTNLGASDIDARMEELLIDGILYAFQEQTSDDANVMLNGFGAIV
NALGQRVKPYLPQICGTIKWRLNNKSAKVREQAADLISRIAIVMKQCGEEQLMGHLGVVL
YEYLGEEYPEMTPPIKDLLPRLAPILKNRHEKVQENCIDLVGRIADRGPEFVPAREWMRI
CFELLEVLKAHKKSIRRATVNTFGYIAKAIGPLDVLATLMNNLKVQERQNRVCTTVAIAI
VAETCSPETVLPALMNEYRVLELNVRNGVLKSLSFLFEYIGEMGKDYIYAVTPLLEDALM
DRDLVHRQTAASAVKHMALGVAGLGCEDALVHLLNLIWPNIFETSPHLINAVMEAIEGMR
VALGAAIILNYCLQGLFHPARKVREVYWRIYNSLYVGAQGSLVAAYPVLEDDQEKCL
NT seq 3594 nt   +upstreamnt  +downstreamnt
atggtggaattagaccgagagatcactaaaacccaagagggaacacggaagatgcaagca
gacatcgccgcttctctgaaattcgatccgtacggagataacgaccgcgattcctacttg
acttcaatcgcacccaacgatgaggaggaggaagaagaaaccaccactggtggttcgctc
gtggctaagcggcttgcttcgtacaccgctcctaagtcgattctcaacgacgtggctcgt
tctcacgaagacgacgacaatggcggcggattcaagcgtaggcagacaatcgcggaacgc
gagggtgagtataagaacaggagactcaatcgagttctctctccggatagaatcgatcct
tttgctatgggagagaagacgccggatccgagtgtgaggacttacacggaccatatgaga
gagacggctttgcagagggagagagaggaaactatgagactcatcgctaagaaaaagaaa
gaagaagaagctgcaaaaaaacagagtgactctgctccttcttcttcttcttcttctaag
aggagacacagttgtgaagaagacggtgcttctcctcctgcaaagaaggctaaatcatca
acttctgattgggatttacctgatgctactccaggaagagtttctattggaagaaggaac
cggtgggacgaaactcctacaccaagtcgtgttactgattctgatggaacacctagtggt
gttactccatgggaagctgcgactccgaaagggctaaagcgtcaacgttcaaggtgggac
gagacaccagcctctatggcaagtgctgctgctacacctatggctggagtagcttacact
cctggtgtcactccagccggtggtatcggtatggctacaccaactcctggtcagcttaat
ctgcttggttttatgacgcctgagcagtacaatatgcaggagagaaacagagtattgagt
gatgaagagcttgatgctatgtttcctaccaaagggtacaaggttttgaatccgcccgat
tcttatgttccaatcaggacgcctgctaagaagattctagggacaccgacgcccatggct
actccgggctacgttatccccgaggaaatccgtgggcagcattatgatgtgccaccggaa
gttcctggtgggttgccgtttatgaaagcagaggatcaacagtattttgaagctttgttg
aaggaggttaacgaagaagagctgtctcctgatgagctgaaagaacgcaagataatgaaa
ctcttgttgaaggttaaaaatggagaccctgagcagaggaaaaaagcactaaggcagatt
agtaataaggctcgtgagtatggtgctggtcctttgtttaacaagattttgccactgctc
atgcaacccactctggaagatcaagagaggcgttttttggtgaaagtgattgagagggtt
atgcttaaacttgatgagctggtaaggcctttcgtccacaagattcttgttgttattcag
cctatgctgattgatggagactatattgctcgtataacaggtagagaagttatctctaac
cttagcaaagcagctggtttagccactatgattgcaaacatgcgtcctgatcttgaccac
gtggatgaatatgtgaggaactcaacggcaagagctttcggtgtggtggcttcagctctt
ggaatccctaaactcttgccgttcctgaaagccgtgtgccagagtaagaagtcgtgggag
gcacggcacactggaattaagattgttcagcagattgccatactaattagctgtgccgtc
ctgcctcacttaaagtctctagtagagcttatcgaacatggtctcagtgatgaaaaccct
aaggttaggactattaccgccttgtcactggctgctcttgccgaggctgctgctccttat
ggtattgagagctttgactctgttctgaagcctctgtggaaaggtatcaggtctcaccat
ggtaaacgtttggctgcgttcttgaaggcgattggttgtattatccccttgatggatgct
atgtatgcgagctactatacaaaagaagtgatggttgtcttgatccgcgagttccagtct
cctgatgaagatatgaaggttattgtcctcaaggtggtgaaacagtgtgtcagtacagaa
ggtgttgaatcggattacattcgcagtgatgttttgtctgcgttttttgattatttatgg
gttaggagaatggctctgaataggagaagctctaagcaccttgttgaaactactgtggag
attgcgaacaaggttggtgttgcagatattgtggggagattggttgaagatcttaaagat
gagagtgaaccgtaccggcgtatggttatggaaaccattgacaaggttgtgacaaacttg
ggagcatctgatattgatgcgagaatggaggaattactcattgatggcattctttatgct
ttccaagaacagacaagcgatgatgctaatgtgatgcttaacggatttggtgctatagtg
aatgctcttggtcagcgtgtaaagccttatcttcctcagatttgtggtaccatcaagtgg
cgattaaataacaagagtgcaaaggtgagagaacaagctgctgatcttatttctagaatt
gctatcgtcatgaagcaatgtggagaggaacagttgatgggacatctaggtgttgtcttg
tatgagtatcttggagaagagtaccctgaaatgactcctcccattaaggatctgcttcca
agactggccccaattttgaagaacagacacgagaaagtgcaggaaaattgtatcgacctt
gttggtaggattgctgatcgtggtcctgagtttgttccggctagagagtggatgagaata
tgtttcgagcttcttgaagtgcttaaagctcataaaaaaagtatccgccgtgccacagtc
aacactttcgggtacattgccaaagccattggaccactagacgttctagccactttaatg
aacaatctcaaagtccaagaacgtcaaaaccgtgtttgcaccacagtcgcaatcgccata
gtcgccgaaacatgctctcccgagactgttttaccagctctaatgaacgagtaccgtgtt
ctagagctcaacgtacgaaacggtgttttgaaatctctctctttcctcttcgaatacatt
ggagaaatgggcaaagattacatatacgcagtcacgccgttgctggaagacgcgctcatg
gacagagacttggttcatagacaaaccgccgcttcagccgtgaaacacatggctttgggt
gtagctggtttgggttgtgaagacgctttggttcacttgcttaacttgatctggcccaac
attttcgagacgtctcctcacctcatcaacgctgtgatggaagccattgaaggaatgaga
gttgcattaggtgcagccattattcttaactattgtttgcagggtttgtttcatccggca
cgcaaggtccgtgaagtgtactggaggatttacaattcgctatacgttggtgctcagggc
tcgctagttgctgcttacccggtccttgaggatgatcaggaaaaatgtttatag

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