Eutrema salsugineum (saltwater cress): EUTSA_v10028287mg
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Entry
EUTSA_v10028287mg CDS
T02985
Name
(RefSeq) hypothetical protein
KO
K12818
ATP-dependent RNA helicase DHX8/PRP22 [EC:
5.6.2.6
]
Organism
eus
Eutrema salsugineum (saltwater cress)
Pathway
eus03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
eus00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
EUTSA_v10028287mg
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
eus03041
]
EUTSA_v10028287mg
Enzymes [BR:
eus01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
EUTSA_v10028287mg
Spliceosome [BR:
eus03041
]
Complex C
Other components
Step II factors
EUTSA_v10028287mg
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
HA2_N
DEAD
AAA_22
AAA_19
nSTAND3
Sigma54_activ_2
AAA_30
TsaE
ATPase
AAA_16
PhoH
ABC_tran
Flavi_DEAD
T2SSE
UvrD-helicase
Motif
Other DBs
NCBI-GeneID:
18022440
NCBI-ProteinID:
XP_006405866
UniProt:
V4LU10
LinkDB
All DBs
Position
Unknown
AA seq
981 aa
AA seq
DB search
MENKELKKLNYLSLVSNVCNELETHLIRDAPKVLAEFIIHLGRHSETVDDFDKKLKEEDV
TEIPDYFLRSLLTVIHGIYPPKPKPKSEKKKKKKKKKREDVEDGDKGSFKALAIKDTKDK
VKELEKEMEREARQRQREENRNKSWDRERRRRGKRMSSPERWEVKQLIASGVLRMEEFPN
YDEEEGDGMVYQEEEEEEVEIEMNEEEPSFLKGQSRYSTVDMSPVKIFKNPEGSLSRAAA
LQSALTKERRETREQQQRTMVDSIPKDLNRPWEDPMPETGERHLAHELKGLGLSAYDIPE
WKKDAFGKTPTFGQRSKLSSIQEQRKSLPIYKLKKELIQAVQDNQVLVVIGETGSGKTTQ
VTQYLAEAGYTTKGKIGCTQPRRVAAMSVAKRVAEEFGCRLGEEVGYAIRFEDCTGPDTV
IKYMTDGMLLREILIDENLSQYSVVMLDEAHERTIHTDVLFGLLKKLLKRRTDLRLIVTS
ATLDAEKFSGYFFNCNIFTIPGRTFPVEILYTTQPESDYLDAALIIVLQIHLTEPEGDIL
LFLTGQEEIDYACQSLYERMQALGKNVPKLNILPVYSALPSEMQSRIFDPSSPGTRKVVV
ATNIAEASLTIDGIYYVVDPGFAKQNVYNPKQRLESLVITPISQASAKQRAGRAGRTGPG
KCYRLYTKSAYSNEMLPTSTPEIQRIDLGMTTLTMKAMGINDLLSFDFMDPPKPQALISA
MEQLYSLGALDEEGLLTKLGRKMAEFPLEPPLSKTLLASVELGCSDEILTVIAMIQTGNI
FYRPRNKQAEADQRRAKFFQPEGDHFTLLAVYEAWKANNFSGSWCIENFVQSRSLRRAQD
VRKQLLSIMDKFKLDVISAGKNLTKISKAITAGFFFHGARKDPQEGYRTLVENQPVYIHP
SGSLFQRQPDWVIYHELVMTTKEYMREVTVIDSKWLVELAPRFFKVADPTKMSKRKRLQR
IEPLYDRYHEPNSWRLSKRRA
NT seq
2946 nt
NT seq
+upstream
nt +downstream
nt
atggaaaataaggaactcaaaaaattgaactatctctctctcgtctccaatgtctgtaac
gaattagagacgcatcttataagagatgccccaaaggtgttggccgagttcatcatccat
cttggtcgtcactctgagactgtcgatgacttcgataagaagctcaaggaggaagacgtc
acagagattccggattatttccttcgctcgctgttaactgttatccacggtatttaccct
ccgaaacctaaacctaagtctgagaagaagaagaagaagaagaagaagaagagagaggat
gtagaagatggagataaaggaagtttcaaagctttggctattaaagatactaaggataaa
gttaaagagcttgagaaagagatggaaagagaagcgagacagagacaaagagaggagaat
cgaaataagagttgggatcgagaaagaagaagaagaggtaagagaatgagctcacctgag
agatgggaagtgaagcagttgattgcctctggtgtcttgagaatggaggagtttccaaat
tacgacgaggaggaaggagatgggatggtttatcaagaggaagaagaagaagaagttgag
attgagatgaatgaagaagaaccttctttcttaaagggccaaagcaggtacagtactgtt
gacatgtctccagtgaagatcttcaagaatccagaaggatcattgagccgagcagctgca
ttgcagtctgcactcacaaaggagaggagagaaacgagggagcagcagcaaagaacaatg
gttgactcaatccccaaggatctgaatcgtccttgggaagatccaatgcctgaaactggt
gaaaggcatcttgctcatgagcttaagggtttaggtttatcagcttacgacatacctgaa
tggaagaaggatgcttttggaaaaactccaacttttggtcaaagatcaaagctttcttca
atccaggagcaaaggaagagccttcctatatacaagttgaaaaaagagctgatacaagct
gtgcaagataatcaagttttggtagtcattggtgagactggctctgggaagacaacacag
gtgactcagtatctcgctgaagcaggttatacaacaaaaggaaagattggttgtactcaa
cctcggagagttgcagcgatgtctgtagccaagagagtagctgaggagtttggttgccgt
ttaggagaagaggtagggtatgcgattcggtttgaggattgtactggaccagatactgtg
atcaagtacatgactgatggtatgcttcttagagagattctgatagacgaaaacctctct
caatactctgttgtcatgcttgatgaagctcacgagcggacaatacacactgatgttctg
tttggtcttctaaagaagctgttgaaacgtagaaccgaccttcgtctgatagtcacgtca
gctacattggatgctgagaaattctctggctatttcttcaactgcaacatcttcacaatc
cctggaagaaccttccctgttgagatactgtatacaacacagccagagtctgattacttg
gatgcagctcttatcatagtccttcaaattcacttgactgagccggaaggtgacattctc
ctctttttaacaggacaggaagaaatcgattatgcatgtcagtcactgtacgagagaatg
caagccctaggtaaaaatgtacctaaactcaacatacttccagtttacagtgcccttcct
agtgaaatgcagtctaggatatttgatccttcatctcctggtacacggaaagtggttgta
gccacaaatattgcagaagcttctttgacaatagatgggatatattatgttgttgatcct
ggttttgcaaagcagaacgtgtataacccaaagcaaaggttagaatctctagtcataact
ccaatctcacaggcatcagcaaagcaaagagctggacgtgctggtcgtactggtccaggt
aaatgttaccgtctctacacgaagagcgcatatagtaacgagatgcttcctacatcaacc
cctgaaatacaaaggattgatcttggaatgacaacgcttaccatgaaagcaatgggcatc
aacgacttgctatcgtttgatttcatggatccaccaaaaccacaggctttgatatctgcc
atggaacagttgtatagcttgggggctttggatgaggaagggttgttgacaaagctaggt
agaaaaatggctgagtttcctcttgaaccaccgctctcaaaaacattgctggctagtgtg
gaactcggatgcagcgatgagattttaacggtgattgctatgatccagacgggcaacata
ttctatagaccgaggaataagcaagctgaagcagaccaaagaagggcaaagtttttccag
cctgaaggtgaccactttacattgctagctgtatatgaagcttggaaggccaacaacttc
tcaggatcatggtgtatcgaaaacttcgtacagtcacgatcgttaagacgtgctcaagat
gtgaggaaacagcttctcagcattatggacaagtttaaactagatgtgataagcgcggga
aagaatcttacaaagataagcaaagcaatcacagcaggattcttcttccatggagcaaga
aaagatccacaggaaggttacaggacgctagtggagaaccaaccggtttatatacatccg
agcggctcgctgttccagagacaaccagattgggtgatatatcatgaacttgtgatgacg
accaaagagtacatgagagaagtgactgtgattgactcaaagtggcttgttgagttagct
ccaagattcttcaaagtcgctgatccaaccaaaatgagcaagcgtaagcgcctgcaacgg
attgagcctttgtatgatcgttatcacgagcctaactcatggcgtctcagcaaaagacgt
gcttaa
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integrated database retrieval system
