KEGG   Eutrema salsugineum (saltwater cress): EUTSA_v10028374mg
Entry
EUTSA_v10028374mg CDS       T02985                                 
Name
(RefSeq) hypothetical protein
  KO
K10610  DNA damage-binding protein 1
Organism
eus  Eutrema salsugineum (saltwater cress)
Pathway
eus03420  Nucleotide excision repair
eus04120  Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:eus00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   04120 Ubiquitin mediated proteolysis
    EUTSA_v10028374mg
  09124 Replication and repair
   03420 Nucleotide excision repair
    EUTSA_v10028374mg
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04121 Ubiquitin system [BR:eus04121]
    EUTSA_v10028374mg
   03400 DNA repair and recombination proteins [BR:eus03400]
    EUTSA_v10028374mg
Ubiquitin system [BR:eus04121]
 Ubiquitin ligases (E3)
  Multi subunit type E3
   Cul4 complex
    Adoptor protein
     EUTSA_v10028374mg
DNA repair and recombination proteins [BR:eus03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     Cul4-DDB2 complex
      EUTSA_v10028374mg
    TCR (transcription coupled repair) factors
     Cul4-CSA complex
      EUTSA_v10028374mg
SSDB
Motif
Pfam: Beta-prop_RSE1_2nd Beta-prop_RSE1_1st CPSF_A
Other DBs
NCBI-GeneID: 18015265
NCBI-ProteinID: XP_006396601
UniProt: V4L348
LinkDB
Position
Unknown
AA seq 1088 aa
MSSWNYVVTAHKPTSVTHSCVGNFTSPQELNLIVAKCTRIEIHLLTPQGLQPMLDVPMYG
RIATLELFRPHGEAQDFLFIATERYKFCVLQWDAESSELITRAMGDVSDRIGRPTDNGQI
GIIDPDCRLIGLHLYDGLFKVIPFDNKGQLKEAFNIRLEELQVLDIKFLFGCAKPTIAVL
YQDNKDARHVKTYEVSLKDKDFVEGPWSQNNLDNGADLLIPVPPPLCGVLIIGEETIVYC
SANAFKAIPIRPSITKAYGRVDVDGSRYLLGDHAGLIHLLVITHEKEKVTGLKIELLGET
SIASTISYLDNAVVFVGSSYGDSQLVKLNLHPDAKGSYVEVLERYVNLGPIVDFCVVDLE
RQGQGQVVTCSGAFKDGSLRIVRNGIGINEQASVELQGIKGMWSLKSSIDEAFDTFLVVS
FISETRVLAMNLEDELEETEIEGFLSQVQTLFCHDAVYNQLVQVTSNSVRLVSSTTRELR
DEWHAPAGFTVNVATANASQVLLATGGGHLVYLEIGDGKLTEVQHAVLEYEVSCLDINPI
GDNPNYSQLASVGMWTDISVRIFSLPELTLITKEQLGGEIIPRSVLLCAFEGISYLLCAL
GDGHLLNFQLDTTTGQLKDRKKVSLGTQPITLRTFSSKNATHVFAASDRPTVIYSSNKKL
LYSNVNLKEVSHMCPFNSAAFPDSLAIAREGELTIGTIDDIQKLHIRTIPLGEHARRICH
QEQTRTFGICSLGNQTNAEESEMHFVRLLDDQSFEFVSTYPLDAFEYGCSILSCSFADDK
NVYYCVGTAYVLPEENEPTKGRILVFIVEDGKLQLIAEKETKGSVYSLNAFNGKLLAAIN
QKIQLYKWMLRDDGTRELQSECGHHGHILALYVQTRGDFIVVGDLMKSISLLIYKHEEGA
IEERARDYNANWMSAVEILDDDIYLGAENNFNLLTVKKNSEGATDEERGRLEVVGEYHLG
EFVNRFRHGSLVMRLPDSEIGQIPTVIFGTVNGVIGVIASLPQEQYMFLEKLQSSLRKVI
KGVGGLSHEQWRSFNNEKRTAEARNFLDGDLIESFLDLSRNKMEDISKSMNVQVEELCKR
VEELTRLH
NT seq 3267 nt   +upstreamnt  +downstreamnt
atgagctcatggaattacgtcgtcactgctcacaagcccaccagtgtcactcactcttgc
gtcggcaacttcaccagtcctcaagagctcaacctcattgtcgcgaaatgtactcggatt
gagatccatttgcttaccccacagggacttcagcctatgctggatgttcctatgtatgga
agaatcgctactttggagttgttccggccccatggagaagcacaagactttttgtttatt
gcaactgagagatacaaattctgtgttcttcagtgggatgctgagtcgtctgagcttatt
actagagcaatgggggatgtttctgatcgtataggtcgaccaacagacaatggtcagatt
ggcataattgatccagattgtagattaattggactccatctgtatgacggtttgttcaag
gttataccatttgataataagggacagctcaaggaagcttttaatatcaggctggaggaa
ttgcaggttctggatatcaagtttctgtttggatgtgcaaagcccacaattgcagtactt
tatcaggacaacaaagatgctcgtcatgtcaaaacatatgaagtctctctaaaagataag
gattttgtcgagggtccgtggtcacagaacaatctcgacaatggtgctgacttgctgatt
cctgtaccaccacctctctgtggcgtccttattattggtgaagaaacaattgtctattgc
agtgcgaatgcattcaaagcaataccaataagaccttccatcactaaagcatatggaaga
gttgatgttgatggctctaggtatcttcttggtgaccatgctggactgattcatctgctt
gttataacgcacgagaaagaaaaggtcactggcctaaaaattgagcttctgggtgaaacc
tctattgcatcgactatatcgtaccttgacaatgctgttgtctttgtcggctcaagctat
ggcgattcacagctagtaaagctaaatctacatcctgatgcaaaaggctcatatgtagaa
gtcttggaaaggtatgtcaacttggggcctattgtcgacttttgtgtagtcgacctcgag
agacaggggcaaggtcaggttgtaacttgttctggagcatttaaggatggttccctccgc
atagttcgcaatggaataggaatcaatgaacaggcgtctgtggaacttcaaggtatcaag
ggaatgtggtcgctgaagtcttcaattgatgaagccttcgacacattcctcgtagtcagc
tttatcagtgaaactcgtgtattagccatgaatcttgaggatgaactggaagaaacagag
attgagggcttcttgtctcaagtgcagactttattttgccatgatgctgtgtataatcag
cttgtacaggttacttcaaattctgttagactagtcagctctacaactagagagttgcga
gatgaatggcatgccccagctggattcactgtcaatgttgcaaccgcaaatgccagccag
gttcttttggcgactggaggtgggcatttggtttatctagaaattggagatgggaaatta
acagaagtgcaacatgccgttttagagtacgaggtttcttgccttgatataaatcctatc
ggcgataatcctaattacagtcagctagcttcggttgggatgtggacagatataagtgtg
aggattttttcgctgccggaactgactcttattacaaaagagcaactaggaggagaaata
attccccgatctgttctgctctgtgcattcgaagggatatcttacttgctctgtgctctt
ggagatggccatcttttgaacttccagttggatacaactaccgggcaactaaaagacagg
aaaaaagtatcactcgggactcagcctataactctgcgcacattttcatcaaaaaacgcc
acacatgtttttgctgcatcagatagaccaactgtaatctatagcagcaacaagaagctg
ttatacagcaatgtcaatcttaaagaagttagtcatatgtgtcctttcaactctgctgct
tttcccgacagtttagcgattgctagagaaggtgaacttacgattggcaccattgatgat
attcagaagcttcacatacgcactattcctcttggagagcatgctcgtcgaatctgccat
caggaacagacgcgtacatttggtatttgcagtttgggaaaccagacaaatgctgaggaa
tctgaaatgcattttgttcgtcttttagacgaccaaagttttgaatttgtgtcaacttac
ccattggatgcctttgagtacggttgctccatacttagctgctcgttcgccgacgacaag
aatgtctattactgtgttggaactgcatatgttttaccagaagaaaatgaaccaactaag
ggaaggatattagtgtttatagttgaagatgggaaattgcagcttatcgctgagaaagaa
accaaaggatctgtttattctctcaatgcctttaatggaaaacttcttgctgctattaat
cagaagattcaattatacaagtggatgctccgggatgatggcactcgtgaattacagtct
gaatgtggacatcacgggcacattctagctctctatgtccagacgcgtggagactttatt
gtggttggtgatctcatgaaatcaatctccttactgatctataagcacgaggaaggtgca
attgaggaacgggctcgggattacaatgcaaattggatgtctgctgttgaaatactcgac
gacgatatctaccttggtgctgagaacaatttcaatcttttgacagtgaaaaagaacagc
gaaggtgctactgatgaagagcgagggcgtttagaggtggttggggagtatcaccttggg
gagtttgtgaacagattccgccatggatcactggtaatgaggctgcctgattcagagatt
ggtcagatcccaactgttatctttggtacagtcaatggagtgattggagtgatagcttca
ctgcctcaagaacagtatatgttcttggagaaattgcagtcgagtttgaggaaagtgatt
aaaggggttggtgggttaagccatgagcaatggagatcgtttaataatgagaagagaacc
gcagaagcacgtaatttcttggatggggacttgatcgaatcgtttctggatctgagtagg
aacaagatggaggatatatctaaatccatgaatgttcaagtggaagagttgtgtaagaga
gttgaagagctcactaggcttcactga

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