Eutrema salsugineum (saltwater cress): EUTSA_v10028382mg
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Entry
EUTSA_v10028382mg CDS
T02985
Name
(RefSeq) hypothetical protein
KO
K15172
transcription elongation factor SPT5
Organism
eus
Eutrema salsugineum (saltwater cress)
Pathway
eus03250
Viral life cycle - HIV-1
Brite
KEGG Orthology (KO) [BR:
eus00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03250 Viral life cycle - HIV-1
EUTSA_v10028382mg
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
eus03021
]
EUTSA_v10028382mg
03019 Messenger RNA biogenesis [BR:
eus03019
]
EUTSA_v10028382mg
Transcription machinery [BR:
eus03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription elongation factors
EUTSA_v10028382mg
RNA polymerase I system
EUTSA_v10028382mg
Messenger RNA biogenesis [BR:
eus03019
]
Eukaryotic type
mRNA processing factors
3' end processing
DRB sensitivity inducing factor (DSIF) complex
EUTSA_v10028382mg
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
KOW1_SPT5
Spt5-NGN
KOW
KOW4_SPT5
KOW7_SPT5
KOW2_Spt5
KOW6_SPT51-2
KOWx_SPT5
KOW5_SPT5
Spt5_N
GPKOW_C
SH3_KIN17_C
KOW6_SPT5
DUF4438
Motif
Other DBs
NCBI-GeneID:
18014807
NCBI-ProteinID:
XP_006397306
UniProt:
V4L527
LinkDB
All DBs
Position
Unknown
AA seq
1034 aa
AA seq
DB search
MPRHRDEDDDVDEEYAGSELEEEEEEVEGRGGGGSSSRKRGRSNFIDDYAEEDSEEDEED
DEDYASRGGKGGAAKRKKSSASIFLDDQARVDDEDEEEEEEGEDDFIVDNGTDLPDERVD
RRRYHERRFLSGEENDEDVEDLERRIQERFSRHHEEYDEEATDVEQQALLPSVRDPKLWM
VKCAIGREREVAVCLMQKFIDRGSDLQIRSVVALDHLKNYIYVEADKEAHVKEAIKGMRN
IYANQKILLVPIREMTDVLAVESKAIDLSRDTWVRMKIGTYKGDLAKVVDVDNVRQRVTV
KLIPRIDLQALASKLDGREVAKKKAFVPPPRFMNIDEAREMHIRVERRRDSMTGDYFENI
AGMLFKDGFLYKTVSLKSVTAQNVTPTFDELEKFNKPSENGESDFGGLSTLFANRKKGHF
MKGDAVIVIKGDLKNLKGWVEKVDEENVLIRSEMKGLPDPLAVNEKELCKYFEPGNHVKV
VSGTHEGATGMVVKVDQHVLIILSDTTKEHVRVFADHVVESSEVTTGVTKIGDYELHDLV
LLDNLSFGVIIRLENEAFQILKGVPDRPEVALVKLREIKCKLERKISVQDHYKNVIAVKD
DVRVIEGPSKGKQGPVRHIYKGVLFIYDRHHLEHAGFICAKCTSCVVVGGSRSGANRNSG
DSMSRFSNFKAPAPVPSSPRRFQRGGMGYNSGGRGRGGRGGGDNSLLGTTVKIRLGPFKG
YRGPVVEEKGNSVRVELEMKIVTVARDAISDNVSVSTPSRDTSRYSMGSETPMHPSRTPL
HPYMTPMRDSGATPIHDGMRTPMRDRAWNPYTPMSPPRDSWEDGNPGSWGTSPQYQPGSP
PSRAYEAPTPGSGWASTPGGSYSDAGTPRDHGSAYANAPSPYLPSTPGQPMTPSSTSYLP
GTPGGQPMTPGTGLDVMSPVIGGDAEAWFMPDILVDIHKAGEDSDVGVIRDVSDGTCKVS
LGSSGGGDTVMALPSELEIVPPRKNDRVKIVGGQYRGSIGKLIGIDGSDGIVKIEDNLDV
KILDLAILAKFVQS
NT seq
3105 nt
NT seq
+upstream
nt +downstream
nt
atgccgcgccacagagacgaagacgatgatgtagacgaagaatacgctggatcggagtta
gaggaagaggaggaggaggtggaagggagaggcggcggcggtagctcgagtcgaaagaga
ggaagatcgaattttattgatgattatgcggaggaggattctgaggaagacgaagaagat
gatgaagattatgccagccgtggaggcaaaggaggggcggctaagagaaagaagtcttca
gcttctattttcttagacgaccaagctcgggtagatgacgaggatgaagaggaagaggag
gagggagaagacgatttcatagttgataatggaactgaccttcccgatgagagagttgat
cgcaggaggtatcatgaacggaggtttctttctggcgaggagaacgatgaggatgtggaa
gatctcgagagaagaattcaagagaggttctctaggcatcatgaagaatatgatgaagaa
gctacagatgtggagcaacaagctcttctgccatcagtccgtgatccgaaattgtggatg
gtgaaatgtgcgattggccgcgaaagagaggtcgccgtttgtcttatgcaaaaattcatt
gaccgaggatcagatttgcagatcagatctgttgttgcccttgaccatctaaaaaactat
atatatgttgaagctgacaaggaagctcacgtgaaggaggcgatcaagggcatgcggaat
atatatgctaatcagaagatcttacttgtcccgataagagaaatgacagatgtccttgct
gttgaaagcaaagcaattgatctatctcgggatacctgggttagaatgaaaatcggaacg
tataaaggtgatcttgctaaggtggttgatgttgataatgtgcgccagagggttacagtc
aagttaatcccaagaattgatctgcaggctctagcctctaagctggacggaagagaagtc
gcaaagaaaaaagcctttgttccacctccacggttcatgaatattgatgaagcgagggag
atgcatatacgtgttgagcgtcggcgtgattccatgaccggtgattactttgagaatatt
gctggcatgcttttcaaagatgggtttctgtataaaacagtatcattgaagtctgtcact
gctcagaatgttacaccaacttttgacgaacttgaaaaattcaataaaccaagtgaaaat
ggagaaagcgattttgggggtttgtcaaccttatttgcaaatagaaagaaaggtcatttc
atgaagggtgatgcagtcattgttatcaagggggatctaaaaaatttgaagggttgggtt
gagaaagtagatgaggaaaatgttcttatcagatcagaaatgaaaggtctccctgatcct
cttgctgtaaatgagaaagagctttgcaaatattttgaacctggaaatcatgtgaaagtt
gtttctgggacccatgaaggtgcaacaggcatggtcgtcaaagttgatcagcatgtgctt
atcattctgtctgacacgaccaaagaacatgtccgtgtgtttgctgatcatgttgttgag
agctcagaagtgacaactggtgttaccaaaattggggactatgaacttcatgatcttgtg
cttctggataacctgagctttggagtaattataagactggagaatgaagcttttcagatt
cttaaaggggttcctgacagaccagaggttgctcttgtcaaactcagagaaatcaaatgc
aagcttgagaggaaaattagtgttcaagatcactacaaaaatgtcattgctgtgaaagat
gatgtcagagtcatcgagggtcctagcaaaggtaaacaaggtcccgtgaggcatatctac
aaaggagtcttatttatatatgatcggcatcaccttgagcatgctggatttatctgcgct
aaatgcacgtcatgcgttgtcgttggtggatcacgttctggtgctaatagaaatagtggt
gattccatgtcaagatttagcaatttcaaggcacctgccccagtaccctcatctccaaga
agatttcaacgcggaggcatgggatataactccggaggcaggggcaggggtgggagagga
ggaggagacaattctttgttgggtactactgttaaaatccgtctaggacctttcaaggga
tataggggacctgtagtagaagagaaaggaaattcagtgcgtgtagaacttgagatgaag
attgtgacagttgctcgagatgcaatatcagataacgtttctgtatctacaccgtctcga
gatacatctcggtatagtatgggaagcgaaacacctatgcatccttctcggactccactt
catccttatatgactccaatgcgggactctggagctacaccgatccatgatggaatgagg
acgccgatgcgtgatagagcttggaatccatacacgcccatgagtccacctagggatagc
tgggaagatggaaatccgggatcttggggaacaagtcctcagtatcagccgggaagtcct
ccttcacgggcatatgaagcaccaactcctggctcaggatgggctagtactcccggtggt
agttactcagatgcagggacacctagagatcatggttccgcctatgctaatgccccaagt
ccttacctaccatctactcctgggcaacccatgacaccaagctcgacttcatacttacct
ggaactcccggaggacaaccaatgactcctggaaccggcctcgatgtcatgtctcctgtt
ataggtggggatgctgaagcatggttcatgcctgatattttggttgacatacacaaggct
ggggaagacagcgatgtgggcgtcatccgggatgtttcggatggaacgtgcaaagtgtct
cttgggtccagcggtggtggtgacactgtaatggctctcccgagcgaactggagatagtc
cctccgaggaagaatgatcgtgtgaaaatcgttggcggccaatatcgtgggtctataggt
aagctgattggaatcgatgggtcggatggtatcgttaagatagaggataatcttgacgtt
aagattctagacctggccatattagccaagtttgttcagtcatga
DBGET
integrated database retrieval system
