Eutrema salsugineum (saltwater cress): EUTSA_v10028426mg
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Entry
EUTSA_v10028426mg CDS
T02985
Name
(RefSeq) hypothetical protein
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
eus
Eutrema salsugineum (saltwater cress)
Pathway
eus03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
eus00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
EUTSA_v10028426mg
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
eus03021
]
EUTSA_v10028426mg
03019 Messenger RNA biogenesis [BR:
eus03019
]
EUTSA_v10028426mg
Transcription machinery [BR:
eus03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
EUTSA_v10028426mg
Messenger RNA biogenesis [BR:
eus03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
EUTSA_v10028426mg
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
zf_PCFS4
CID
Pcf11_C
zf_UBZ
Motif
Other DBs
NCBI-GeneID:
18014446
NCBI-ProteinID:
XP_006396657
UniProt:
V4KJT1
LinkDB
All DBs
Position
Unknown
AA seq
846 aa
AA seq
DB search
MESEKILNPRLISINSTGRKGMPVELPQKPPPPPSILERFKALLNQREDEFGGEEVPPPS
MEEIVQLYEVVLGELTFNSKPIITDLTIIAGEQREHGEGIANSICTRILEAPVEQKLPSL
YLLDSIVKNIGRDYVRYFSSRLPEVFCLAYRQAHPSLHPSMRHLFGTWSSVFPPPVLRKI
EMQLQLSSAKNHQSSLGASESTQPTRGIHVNPKYLRRLEPSAAESNLRGINSSARVYGQN
ALGGTGYDDFEDHLESPTSLGGPRSSGTLALSSSAIGADGFPRRFSDGANTSNQAYNYGM
GRATGRDDEHMEWRRKDNLSQGNDHERPRALIDAYGVDTSKQVSIRKPIRDMNGIQSKMV
TPWQNTEEEEFDWEDMSPTLDRSRAGEFLRSSVPALGSVRPRPRLGNTSEFHLDSDIKNG
VSHQLRENWNLSQNFPLSSNRGNTIAGNDLKVLPSSVGLVSSNSEFGAPPFDNFQDGNSR
FGRGPPMISRIGSSGADALPDGTWPHLSVRGSNSLPVPSAHLHHLAIPGNAMSNRLHGKP
LYRPENHVSQSHLNDMTQQNQMLVNYLPSSSAMAPRGMQTLLPHGHGYPSQGSTIRPSLS
IHGGEAMHPLSAGVLSQIGSISQNPSLAASNRPPGGAFSGLIGSLMAQGLISLNNQPTGQ
GSLGTEFDADRLKIRNESAISALYGELPRQCTTCGLRFKCQEEHSKHMDWHVTKNRMSKN
HKQKPSRKWFVSCSMWLSGAEALGAEAVPGFLPSEPTTEKKDDEEMAVPADEDQTSCALC
GEQFEDFYSDETEEWMYKGAVYMNAPDGSTTDVDNSQLGPIVHAKCRPESNGGDNEEGSQ
RKKMRS
NT seq
2541 nt
NT seq
+upstream
nt +downstream
nt
atggaatcggagaaaatactcaacccaaggcttatctcgattaatagcaccggccgcaaa
gggatgcccgttgagttgccgcagaaaccgcctccgccgccgtcgatactggaacggttc
aaggctctgctcaatcagcgtgaagatgaattcggtggcgaagaggttccgcctccgagc
atggaagagattgttcagctctacgaggtcgttttgggcgagcttactttcaattctaag
cctattatcactgatctcactatcatcgccggtgaacagcgggaacatggagaaggaatc
gccaattctatctgcacccgaatcctcgaggcaccagttgagcaaaagttgccttctctg
tatcttttagacagcatagtcaagaacattgggcgggattatgttcgctatttctcatca
cgtttacccgaggtcttttgcctagcgtacaggcaagcgcatccgagtttacatccttca
atgcgccacctgtttgggacttggtcgagtgtttttccaccacctgtgttacgcaagatt
gagatgcaattgcaactttcttcagcaaaaaaccaccaatcttccttaggggcctctgag
tctactcaaccaaccaggggcatacatgttaatccaaaatatcttcgtaggctggagccc
tcagccgctgaaagtaacttgagaggaataaattccagtgcaagagtgtacggccaaaat
gcgctcggtggtactggatatgatgattttgaagatcatttagagagcccaacttccctg
ggtggaccaaggtctagtggaactttggccctctcatcttcagcaattggagcagatggg
tttcctaggaggtttagtgatggagctaatacttctaatcaagcctataactatggaatg
ggtcgagctactggcagagatgatgaacatatggaatggcgaagaaaggacaacttaagc
caaggcaatgaccatgaaagacctagagctttgatagatgcatatggagttgacaccagc
aaacaagtatccatcaggaaaccaattcgcgatatgaatggcatccaaagtaagatggtt
acaccttggcagaacactgaggaagaagagtttgattgggaagatatgagccctacccta
gatcgtagtagggctggtgaatttttgcgatcttctgtaccagcattaggaagtgtaagg
ccaagacctagactaggaaacacaagtgaatttcatttagattctgacattaagaacggt
gtaagtcatcagctacgagaaaattggaatttgtcacagaattttcccctttcatccaac
cgtggtaataccatagcaggaaatgacttgaaagtattgccttcatctgtaggattagtt
tcatcaaacagtgaatttggggctcctccttttgataattttcaagatggtaactctcgt
tttggtcggggcccccctatgatatcaagaattgggtcttctggtgctgatgctcttcct
gatgggacatggccccatttgagtgttagaggatccaactctctccctgtaccttctgct
cacctgcatcatttggcaatccctggtaatgcaatgtcaaatcgcttgcatggtaagcct
ttatataggcccgagaaccatgtctcccagagtcatcttaatgatatgactcaacagaat
caaatgctagttaattatttgccatcttcatctgcaatggctccaaggggaatgcaaacg
ctgttaccccacggtcatgggtacccttcacaagggtcaaccattagaccatctttatca
atccatggtggggaagccatgcatcctctttctgcaggggttttatcacaaataggatcc
atctctcagaatccttcgttggcagcctctaatcgaccaccgggcggtgcattctctggt
ctaattggctctctcatggctcaaggtttgatctcgttgaacaatcagcctactggtcag
ggatcattggggacagagtttgatgcagacaggctcaagatacgtaacgagtctgcaatc
agtgctctatatggagagctcccaaggcaatgcacaacatgtggtctacgcttcaagtgc
caagaagagcacagtaagcacatggattggcatgtaaccaagaataggatgtccaagaac
cataagcagaaaccttctcggaaatggtttgtaagttgtagcatgtggcttagtggtgca
gaggcacttggagctgaagcagtaccagggttcttaccctcagagccaacaactgaaaag
aaggatgacgaggagatggcagttcctgcagatgaagaccaaacttcatgcgcgttatgt
ggtgagcaatttgaagacttttatagtgatgaaaccgaggaatggatgtacaaaggtgca
gtgtacatgaatgctcctgacggatcaacaacagatgtggacaactctcagttaggtcct
atagtgcatgcaaagtgcaggccagagtcgaatgggggtgataatgaagagggtagtcaa
agaaaaaagatgcggagttag
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integrated database retrieval system
