KEGG   Eutrema salsugineum (saltwater cress): EUTSA_v10028433mg
Entry
EUTSA_v10028433mg CDS       T02985                                 
Name
(RefSeq) hypothetical protein
  KO
K14548  U3 small nucleolar RNA-associated protein 4
Organism
eus  Eutrema salsugineum (saltwater cress)
Pathway
eus03008  Ribosome biogenesis in eukaryotes
Brite
KEGG Orthology (KO) [BR:eus00001]
 09120 Genetic Information Processing
  09122 Translation
   03008 Ribosome biogenesis in eukaryotes
    EUTSA_v10028433mg
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03009 Ribosome biogenesis [BR:eus03009]
    EUTSA_v10028433mg
Ribosome biogenesis [BR:eus03009]
 Eukaryotic type
  90S particles
   U3 small nucleolar RNA-associated proteins
    EUTSA_v10028433mg
SSDB
Motif
Pfam: WD40_CDC20-Fz WD40 WD40_Prp19 WDR55 Beta-prop_WDR90_POC16_2nd Beta-prop_EML_2 WD40_WDHD1_1st ANAPC4_WD40 Beta-prop_RIG_2nd Beta-prop_TEP1_2nd Beta-prop_HPS5 WD40_MABP1-WDR62_2nd Beta-prop_EML EIF3I WDR90_beta-prop_4th Beta-prop_IFT140_1st Beta-prop_SCAP Beta-prop_CAF1B_HIR1
Other DBs
NCBI-GeneID: 18014463
NCBI-ProteinID: XP_006397347
UniProt: V4KLL7
LinkDB
Position
Unknown
AA seq 817 aa
MLEYRCSSVDWKPSPVVALANSADDSQVAAAREDGSLEIWLVSPGAVGWHCQLTIHGDPN
SRISSLAWCRAGSKRLPSGRLFSSSIDGSISEWDLFDLKQKTVLESIGISIWQMAVAPTN
VPSVDAEGKADNRIENGYSSEKSNDEEESGSEDESDSYEFHEQSEDTDRLLAIACDDGCV
KLYRISDLNKLTYYRSLPRVSGRALSVTWSPDAHRIFSGSSDGLIRCWDANSCHEVYRIT
VGLGGLGSTSGTCVWSLLSLRCAVLVSGDSTGTVQFWDSQHGTLMESHSSHEGDVNTLAA
APSHNRVFSAGADGQVILYKLSGSTNSSQDLKPSSSLKWDYIGYVKAHTHDIRALTVAVP
ISREDPFPDDMLPDRSARKQRKKGKPVDFTYQKWAHLGVPMLISAGDDAKLFAYSIQEFT
KFSPHDICPAPQRVPMQMVHNSVFNQTSLLLVQGISDLDILRLNVSNDSSGRASTKPLVR
VKSRDARKIICSAISNTGSHFAYSDQIGPSLFELRRNETAKSPWSVSRRRLPTLPFAHSM
IFSSDCSRLITAGHDRKIYAIDISSMELVDTFTPCREEQEGESSPMEPPITKLYTSSDDQ
WLAAINCFGDIYVFNLETQRQHWFISRLDDASVAAAGFHPWNNNALVISTSSNQVFAFDV
ESRQLGKWSLLHTNVLPKRYQEFPGEVIGLSFSPSPNSSSVIIYSSRAKCLIDFGKPVAE
DEENEFPNGNLSKTLEGKLVNMGLKLGKGTNRKRRLEEYQLEGKSKERKNFEILPSKHPV
LFVGHLSKNSIMVIEKPWMDVVKSFDTQPVDRHIFGT
NT seq 2454 nt   +upstreamnt  +downstreamnt
atgcttgagtaccgttgcagctctgttgactggaagccatctccggtggtagccctagct
aacagcgccgacgattctcaagtcgccgcggctcgcgaggacggttctcttgaaatctgg
ctcgtttcccccggcgccgtaggatggcactgtcaactcaccatccatggcgatccaaac
tcgagaatctcgtcccttgcgtggtgccgtgctggttcaaaacggctgccttccggccgt
ttgttttcttcgagcatcgatggctcgatttctgagtgggatcttttcgacttgaagcag
aagactgtgctcgagtcaattggaatctcaatctggcaaatggctgttgctccaactaat
gttccctccgttgatgcagaaggtaaagctgataaccggattgagaatggatactcgagt
gagaaatcgaatgatgaggaagaaagtgggagtgaagatgaatctgactcgtacgagttt
catgagcaatcagaggatacagataggcttcttgcaattgcctgtgatgatggctgtgtg
aaactataccgtatctctgacttaaacaagttaacatactatagatcattgcctagggtc
agtggacgtgccttaagtgttacatggagtccagacgcacataggatcttttcgggtagc
agcgatgggctaataagatgctgggacgctaactcctgtcacgaggtatacagaattaca
gttggtcttggaggactaggaagtacttctgggacctgtgtttggtcacttctttctttg
aggtgtgcagttcttgttagtggagatagtacaggaactgtccaattttgggatagtcag
catggaactcttatggaatcacactctagtcacgaaggtgatgtcaatacccttgcagca
gcccctagccataatcgagtcttttctgctggtgcggatggacaggttattctttataag
ctctctggtagtacaaacagttctcaagatttaaagccttcttcctctctgaagtgggat
tatattggctatgtaaaggctcatacacatgacatcagagctcttacagttgctgtacca
attagtcgagaagatccctttccggatgatatgttgccagataggagtgcacgtaaacaa
cgcaaaaaagggaagccagttgactttacttaccaaaaatgggctcatttgggtgttccg
atgctcatttccgctggtgatgacgcaaagctttttgcatattcaattcaggaattcact
aagttctccccacatgatatatgtcctgcgcctcagagagtacccatgcaaatggtacat
aactcggtgttcaatcagacttctcttctcctggttcagggtattagtgatttagatatt
cttcgacttaacgtaagcaatgattctagtggacgtgcctcaacaaagccattggttcgt
gttaaaagtagggatgccaggaagatcatatgcagtgcaatttctaacactggatcacat
tttgcttattctgaccaaattggccccagtctgtttgagttgaggagaaatgaaactgcc
aagagtccatggagtgtcagtagaaggcgacttcccacacttccatttgcccattccatg
attttcagttcagactgctcacggctgataacagcagggcatgatagaaaaatatatgct
attgacattagtagtatggaactagtagatactttcacaccatgtcgggaggagcaagaa
ggtgaatcttcacctatggagcctccaataacaaaattgtatactagctcagatgatcag
tggttagctgctatcaattgctttggggatatctatgtattcaaccttgaaacacaaagg
cagcactggttcatatcaaggcttgatgatgcatccgttgcagctgctggttttcatcct
tggaataacaatgcccttgtgatctcaacctcctcgaaccaggtctttgcttttgatgtt
gaatctagacagttgggcaagtggtcgcttctgcacactaacgttctgccaaagaggtac
caagagtttcctggcgaggtcattggactctcattctccccgtctccaaattcatcttct
gtaataatttacagttccagggcaaagtgtttgattgacttcgggaagcctgtggcggaa
gatgaagagaatgaatttccaaacggcaatctatctaaaacactagaaggtaaacttgtc
aacatggggttgaaattggggaaaggtacaaaccgaaaacgtcggttagaagagtatcag
ttagagggtaagagtaaagagagaaaaaactttgaaatcttaccctcaaagcaccctgtt
ttatttgtgggtcatctttctaaaaactcaatcatggtgattgagaaaccatggatggat
gttgtcaagagtttcgatactcaaccagtggacagacatatttttgggacttga

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