Eutrema salsugineum (saltwater cress): EUTSA_v10028564mg
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Entry
EUTSA_v10028564mg CDS
T02985
Name
(RefSeq) hypothetical protein
KO
K03138
transcription initiation factor TFIIF subunit alpha
Organism
eus
Eutrema salsugineum (saltwater cress)
Pathway
eus03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
eus00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
EUTSA_v10028564mg
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
eus03021
]
EUTSA_v10028564mg
Transcription machinery [BR:
eus03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIF
EUTSA_v10028564mg
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
TFIIF_alpha
zf-C3HC4_3
Zn_Ribbon_1
Motif
Other DBs
NCBI-GeneID:
18014891
NCBI-ProteinID:
XP_006396740
UniProt:
V4LEK1
LinkDB
All DBs
Position
Unknown
AA seq
542 aa
AA seq
DB search
MSSHCLTLKSECMRCKSPSDLYGSSCRHMTLCFKCGKTMAENKSKCIDCGTIVTRLIREY
NVRAAAPTDKNYFIGRFVSGLPNFKKGSENKWSLRKDIPQGRQFTDAQREKLKNKPWILE
DETGQFQYQGHLEGSQSATYYLLVMQNKEFIAIPAGSWYNFNKVAQYKQLTLEEAEEKMK
NRRKTADGYQRWMMKAANNGPALFGETENDKEAGGSSGGGGRGRKKSSGGDEEEGNVSDR
GEEDEEEEASRKSRLGLNKKSNDDDEEGPRGGDLDMDDDDIEKGDDWEHEEIFTDDDEAV
GNDPEEREDLLAPEIPAPPEIKQDDDDEENEEEEGGLSKSGKELKKLLGKSNGLNESDEE
DDDDSDDDEETNFGPITNSKQKDATKEEPVESTPPKPAPSVSSRGTPSAKPSKGKRKLND
GDAKKPSSSVQKKVKTESESKSSSVKEEKSNSISKSNAPTKAVKPESTSAPAASAATGPV
TEDEIRGVLMEKKQVTTQDLVSRFKARLKTKEDKNAFAEILRKISKIQKNAGSQNFVVLR
ER
NT seq
1629 nt
NT seq
+upstream
nt +downstream
nt
atgtcgtcgcactgtttgacgctgaagtcggagtgtatgcgctgcaaatcgccgtccgat
ctgtacggaagctcgtgcaggcatatgacgttatgcttcaagtgtggtaaaaccatggct
gagaataaatccaagtgtatcgattgtggaaccatcgtcacgcggctgattcgggaatat
aatgttcgtgcggctgcacccaccgataagaactacttcattggtagattcgtgtctggt
cttcccaatttcaagaaaggctctgagaataaatggtctcttcgtaaagatataccacaa
ggtcgtcagtttactgatgcacaacgggagaagttaaagaacaaaccttggatcttggaa
gatgaaactggccagtttcagtaccaaggacatcttgaaggctcccagtctgcaacttac
tatctcttggtgatgcagaacaaagagtttatcgctattcccgctggttcttggtataac
ttcaacaaggttgcacagtataagcaacttactctggaagaagcggaagagaagatgaag
aaccgtagaaaaactgctgatgggtatcaaaggtggatgatgaaagctgcaaataatggt
ccagcgttatttggggaaacggagaatgacaaagaagccggtggaagcagtggaggaggt
ggtaggggtcgtaagaagtcatcaggcggtgatgaagaagaaggaaatgtctctgacaga
ggtgaggaagacgaagaggaagaggcatcacggaaaagtaggctcgggcttaataagaag
agtaatgatgatgatgaagaaggtccgaggggtggtgatcttgacatggatgatgatgac
attgagaagggtgatgactgggagcatgaagaaattttcactgatgatgatgaggctgtt
ggtaatgatcccgaggaacgtgaagatcttctggcgcctgaaattcctgctcctccagaa
ataaagcaggatgatgacgatgaagaaaacgaagaagaagagggaggattgagcaaatct
ggtaaagagttaaagaaactgctcggcaagtctaatggtttgaatgaatctgatgaagaa
gacgacgatgactcagatgatgatgaggagacaaacttcggtccaattacgaattcaaaa
cagaaggatgcgaccaaagaagaacctgttgagagcactcctccaaaacctgcaccctct
gtatcttctcgtggaacaccttctgcaaaaccatccaagggaaagagaaaactaaatgat
ggcgatgctaaaaaaccaagcagctctgttcaaaagaaagtgaagactgaaagtgagtcg
aaatcttcttcggtgaaggaagagaaaagtaactcgatttctaaatccaacgccccgaca
aaagccgtgaaacctgaatcaacttcagctcctgcagcttcagctgctacggggcctgtt
actgaggacgaaatccgtggtgttctgatggagaagaagcaagtcactacacaggacctt
gtctccaggtttaaggcaagacttaaaaccaaagaggacaagaatgcctttgctgaaatt
ctgaggaagatctcaaagatacagaagaacgcaggatcacaaaacttcgtcgttttgaga
gagagatga
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