Euzebya pacifica: DVS28_a0407
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Entry
DVS28_a0407 CDS
T05999
Name
(GenBank) DEAD-box ATP-dependent RNA helicase CshA
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
euz
Euzebya pacifica
Pathway
euz03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
euz00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
DVS28_a0407
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
euz03019
]
DVS28_a0407
03009 Ribosome biogenesis [BR:
euz03009
]
DVS28_a0407
Enzymes [BR:
euz01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
DVS28_a0407
Messenger RNA biogenesis [BR:
euz03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
DVS28_a0407
Ribosome biogenesis [BR:
euz03009
]
Prokaryotic type
rRNA helicases
DVS28_a0407
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
Cas3-like_C_2
Phage_integrase
WSD
Motif
Other DBs
NCBI-ProteinID:
AXV05114
UniProt:
A0A346XSB7
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All DBs
Position
complement(499680..501467)
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AA seq
595 aa
AA seq
DB search
MTPPDQEPDVPDAEPTTDTSSPSPDAGPDAAPDAGPDAPPAFADLGLREELVKALDQLGY
EEPTPIQAEAIPPLLAGRDLLGQAATGTGKTAAFALPLLQRIPDEVDRGRQPIGLVLVPT
RELAMQVSEAIHTYGKAMGARVLPIYGGQPIFRQLKQLDRGVDIVVATPGRAMDHLGRGS
LALDSLEVVVLDEADEMLDMGFAEDIEAILEQAPAERQTTLFSATLPRRISYLADRHLNN
PVRIQIKREEPAEGEAPKVKEVVYVVTRHHKPAALARVLDVEDPAATIVFCRTRLEVDEL
TSTMNGRGYRAEALHGGMDQGMRDRVMNRFRSGAAELLIATDVAARGLDIDTLTHVVNHS
LPSAVESYTHRIGRVGRAGREGMAISLVEPREHRAMKAIERHTGRKMQVETVPTVADLRA
RRLGMLRASMREMLLADGDDLDTFRPVVESLSDEFDLVEIALAGIKLAHDETHSDADDDD
VPEASFSGKGKGDKGGYQGKNSRGGPGGGKPRSSSGPTTKLWMNLGREAGMRPKDLVGAI
ANETSLTGRDVGAIQIHGRFSLVEVPAAAAEEVISSLMRTKIRGKKAKVREDKIT
NT seq
1788 nt
NT seq
+upstream
nt +downstream
nt
gtgacaccccctgatcaagaacccgacgttcccgacgcggaacccaccaccgacaccagc
tcccccagccccgacgccgggcccgacgcggcgcccgacgccgggccggacgcaccgccc
gcgttcgccgacctcggcttgcgcgaggagctcgtcaaggccctcgaccagctcggctac
gaggagcccaccccgatccaggccgaggcgatcccgccgctcctggcgggacgtgacctg
ctcggccaggccgccacgggtaccggcaagaccgccgccttcgccctccccctgctgcag
cgcatccccgacgaggtcgaccgcggacgacagcccatcgggctggtcctggtcccgacc
cgcgagctggccatgcaggtctcggaggccatccacacctacggcaaggccatgggcgcc
cgcgtcctgccgatctacggcggccagccgatcttccgccagctcaagcagctcgaccgt
ggcgtcgacatcgtcgtggccacccccggccgggcgatggaccacctcggccgtggctcc
ctggcgctggacagcctcgaggtcgtcgtgctcgacgaggccgacgagatgctcgacatg
ggcttcgccgaggacatcgaggccatcctcgagcaggccccggccgagcgacagaccacc
ctgttctccgccaccctgccccgtcgtatctcctacctggccgaccgccacctgaacaac
ccggtgcgcatccagatcaagcgcgaggagccggccgagggcgaggcgccgaaggtcaag
gaggtcgtctacgtcgtcacccggcaccacaaaccggccgccctggcacgcgtgctggac
gtcgaggaccccgccgccaccatcgtgttctgccgcacccgcctggaggtcgacgagctg
acctccaccatgaacggccggggctaccgggccgaggcgctgcacggcggcatggaccag
ggcatgcgcgaccgcgtgatgaaccgcttccgctccggtgccgccgagctgctgatcgcc
accgacgtcgccgcccgcggcctcgacatcgacacgttgacccacgtggtcaaccactcc
ttgccgtcagcggtggagtcctacacgcaccgcatcggccgcgtcggccgcgccggccgc
gagggcatggccatctcgctggtcgaaccgcgcgaacaccgtgcgatgaaggccatcgag
cgccacaccggccgcaagatgcaggtcgagaccgtccccacggtggctgacctccgcgcc
cgtcgcctgggcatgctccgcgcgtcgatgcgcgagatgttgctggccgacggcgacgac
ctcgacaccttccgcccggtcgtggagtcgttgtccgacgagttcgacctggtcgagatc
gcgctggccggcatcaagctggcgcacgacgagacccacagtgacgccgatgacgacgac
gtccccgaggcgtccttctccggcaagggcaagggcgacaagggcggctaccagggcaag
aacagccgaggcgggccgggcggcggcaagccccgttcctcctccggtccgaccaccaag
ctgtggatgaacctgggtcgcgaggccggcatgcggcccaaggacctggtcggggccatc
gccaacgagaccagcctgaccggtcgcgacgtgggggccatccagatccacggtcgcttc
agcctggtcgaggtgccggcggccgcggcggaggaggtcatcagctcgctgatgcgcacc
aagatccgtggcaagaaggccaaggttcgcgaggacaagatcacctga
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