Euzebya pacifica: DVS28_a3347
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Entry
DVS28_a3347 CDS
T05999
Name
(GenBank) Ribonuclease J2 (endoribonuclease in RNA processing)
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
euz
Euzebya pacifica
Pathway
euz03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
euz00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
DVS28_a3347
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
euz03019
]
DVS28_a3347
Messenger RNA biogenesis [BR:
euz03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
DVS28_a3347
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
RNase_J_C
RMMBL
Lactamase_B
Lactamase_B_2
Anti-Pycsar_Apyc1
Lactamase_B_6
Motif
Other DBs
NCBI-ProteinID:
AXV08022
UniProt:
A0A346Y0M5
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Position
complement(3836451..3838106)
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AA seq
551 aa
AA seq
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MSISNDAAVVSFYGGLGEIGANMCAIEVDGKAVLVDVGLTFPDAEHHGIDLILPDWKDLI
ERGPEIVGVVITHGHEDHMGALPFFLRDFPGIKVYSAKLTLGLLEAKLVEHPDARVELIE
VEPGEKVAIDDFELEFIQVTHSIPDGMAVAVHTPHGTILHTGDFRLDQTPIDGRVTDLPH
LAQLGDQGISLLLCDSTNADVPGHVPSERTVGNTLRTVFESARGRVVMTTFASHVHRVQQ
AIDAATAMGRKVCFVGRSMVRNMPIARELGYLRYDDADIIDIADCDRYSPARILIICTGS
QGEPYAALSLMAAGQHKHVKLTEGDTVVMASSQIPGNEAAISRALNGLMRQGAEVVHRRE
HGVHVSGHAAAEELKFFHNIVRPAAVVPVHGEFRHLIAHAQLAVATGTPADQVFVCTDGD
RVVLRDGRVERGDGFNSGRVFVDGLGVGDVGNAVLRDRERLSSEGVCVAVLRLDSRFRLD
GEPEIMQQGLIYEAENAHLLDQAAKVLGDDVRSLGSSNEDVVRRKVYESLSRFWREQLGR
KPVVVPVLMEV
NT seq
1656 nt
NT seq
+upstream
nt +downstream
nt
atgagcatttccaacgacgcagcagtcgtctccttctacggcggtctcggtgagatcggc
gccaacatgtgcgccatcgaggtggacggcaaggcggtgctggtcgacgtcggcctgacc
ttccccgacgccgagcaccacggcatcgacctgatcctcccggactggaaggacctgatc
gagcgcggtcccgagatcgtgggcgtggtgatcacccacggccacgaggaccacatgggc
gccctgcccttcttcctgcgcgacttccccggcatcaaggtctactccgccaagctcacc
ctcgggctgctcgaggccaagctggtggagcaccccgacgcccgtgtcgagctcatcgag
gtcgaacccggtgagaaggtcgccatcgacgacttcgagctggagttcatccaggtcacc
cactccatccccgacggcatggccgtggccgtccacaccccccacgggacgatcctgcac
accggggacttccggctcgaccagacgcccatcgacggccgcgtcaccgacctgccccac
ctcgcccagctgggcgaccagggcatctcgctgctgctgtgcgactccaccaacgccgac
gtgcccggccacgtgcccagcgagcgcaccgtcggcaacaccctgcggacggtcttcgag
tccgcccgcggacgcgtggtcatgacgacgttcgccagccacgtccaccgggtgcagcag
gcgatcgacgcggcgaccgcgatgggccgcaaggtctgcttcgtcggccggtccatggtc
cgcaacatgccgatcgcccgtgagctcggctacctgcgctacgacgatgccgacatcatc
gacatcgccgactgcgaccggtacagcccggcccgcatcctgatcatctgcaccggttcc
cagggcgagccctacgcggcgctgtcgctcatggccgccggccagcacaagcacgtgaag
ctcaccgagggcgacaccgtcgtgatggcgtcctcccagatcccgggcaacgaggccgcg
atcagccgggcgctcaacggcctgatgcgccagggtgccgaggtcgtgcaccgtcgcgag
cacggggtgcacgtctcgggccacgccgcagcggaggagctgaagttcttccacaacatc
gtccggccagctgccgtcgtgcccgtgcacggcgagttccgccacctcatcgcccacgcc
cagctggccgtggcgaccggcacccccgccgaccaggtgttcgtctgcaccgacggcgac
cgggtcgtcctgcgcgacggccgggtcgagcgtggcgacggcttcaacagcggccgcgtg
ttcgtcgacggcctcggcgtcggtgacgtcggcaacgccgtgctgcgcgaccgcgaacgc
ctctcctcggagggtgtctgcgtcgcggtgctgcgactggacagccggttccggctggac
ggcgaacccgagatcatgcagcagggcctcatctacgaggccgagaacgcccacctgctc
gaccaggccgccaaggtcctcggcgacgacgtccgttcgctcggcagcagcaacgaggac
gtcgtgcgacgcaaggtgtacgaatccctcagccggttctggcgcgaacagctgggccgc
aagcccgtcgtcgtgccggtcctcatggaggtgtga
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