Epilithonimonas vandammei: EIB75_04940
Help
Entry
EIB75_04940 CDS
T06885
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
eva
Epilithonimonas vandammei
Pathway
eva03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
eva00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
EIB75_04940
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
eva03019
]
EIB75_04940
Enzymes [BR:
eva01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
EIB75_04940
Messenger RNA biogenesis [BR:
eva03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
EIB75_04940
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
ERCC3_RAD25_C
AAA_19
Cas3-like_C_2
UvrD-helicase
CMS1
P-loop_SecA
Phage_integrase
AAA_22
Motif
Other DBs
NCBI-ProteinID:
AZI54635
UniProt:
A0A3G8ZCY9
LinkDB
All DBs
Position
complement(1044340..1045590)
Genome browser
AA seq
416 aa
AA seq
DB search
MKFEQLGLIKPILDALSSQGYEQPTPIQEKAIPSILQGKDLLGSAQTGTGKTAAFAIPIL
QNLSDKNQPKNHIKALILTPTRELAIQIQENFQAYGKHLKLKSLVIFGGVKQHHQENDLR
KGVDILVATPGRLLDFISQGIIKLNQLEIFVLDEADRMLDMGFVHDVKRILKLLPPKRQN
LFFSATMPKEIANLASDILVNPVKVEVAPVSSTADTIQQSIYFVDKDDKTDLLVHLLQDP
KLDQVLVFSRTKHGADKIARKLHQSKISAEAIHGNKSQNARQNALNNFKSKKTRVLVATD
IAARGIDIDELKYVVNYELSDVSETYVHRIGRTGRAGSEGTSFSFVDGLDLANLRSTEKL
IGKKIPVVKDHPYHTDNLVEQKRDSNNKPFTPRPKPQAKTEIGFKKPKNKGFFRKK
NT seq
1251 nt
NT seq
+upstream
nt +downstream
nt
ttgaaatttgaacaattaggcttaatcaagccaatattagacgcactgagttctcaaggt
tacgaacaacctacacccattcaggaaaaagcaattccctccattttacagggaaaagat
ttattaggaagcgcacagacaggaacaggaaaaactgcagcatttgcaatccctatatta
cagaatttatctgataaaaaccagccaaaaaatcatataaaagcattgattcttacaccg
acaagagaattggcgattcagattcaggaaaatttccaagcctatggaaaacatcttaag
ctgaaatcacttgttatttttgggggtgtgaaacaacatcaccaggaaaatgaccttaga
aaaggtgttgatattttggtagctacgcccggcagattgctagattttatttcccaagga
attattaagttaaaccaactggaaatatttgttttagatgaagcagaccgaatgctcgat
atgggatttgttcacgatgtcaaaagaattctgaaattacttccaccgaaaagacaaaac
cttttcttctctgcaacgatgccgaaagagattgctaatttggcgtcagatattctggta
aatcctgtaaaagtagaagttgctccagtttcttctaccgcagacacaatccagcaaagt
atttattttgtggacaaagatgataaaaccgatcttttagtccatctgttgcaagacccg
aagctggatcaagttttggtattttctagaaccaaacacggcgcagataaaatcgcgaga
aaattgcatcagtccaaaatttcggcagaagcaatacacggaaataagtctcaaaacgca
agacaaaatgcacttaacaatttcaaatcgaagaaaacaagagttttggtggctacagat
attgctgcaagaggaattgatattgacgagctgaaatatgtagtgaattacgaactttcc
gatgtttcagaaacttatgttcacagaatcggaagaactggtagagccggctcagaagga
acctctttttcgtttgttgatggattggatttggcaaatcttagaagcacagaaaaattg
attgggaaaaagattcctgtcgtaaaagatcatccttatcatactgataatttggttgaa
cagaaaagagacagtaataacaagcctttcacaccgagaccaaaacctcaggcaaagacc
gaaataggtttcaagaagcctaaaaacaaaggattttttaggaagaaataa
DBGET
integrated database retrieval system
