Epilithonimonas vandammei: EIB75_14860
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Entry
EIB75_14860 CDS
T06885
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
eva
Epilithonimonas vandammei
Pathway
eva03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
eva00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
EIB75_14860 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
eva03021
]
EIB75_14860 (rpoC)
03400 DNA repair and recombination proteins [BR:
eva03400
]
EIB75_14860 (rpoC)
Enzymes [BR:
eva01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
EIB75_14860 (rpoC)
Transcription machinery [BR:
eva03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
EIB75_14860 (rpoC)
DNA repair and recombination proteins [BR:
eva03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
EIB75_14860 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Biotin_lipoyl_2
RPOC_hybrid
RnfC_N
Motif
Other DBs
NCBI-ProteinID:
AZI56458
UniProt:
A0A3G8ZGV4
LinkDB
All DBs
Position
3112364..3116629
Genome browser
AA seq
1421 aa
AA seq
DB search
MSNKNKTSRFNKITIGLASPESILQESRGEVLKPETINYRTHKPERDGLFCEKIFGPVKD
YECACGKYKRIRYKGIVCDRCGVEVTEKKVRRERIGHINLVVPVAHIWYFRSLPNKIGYL
LGIPSKKLDMIIYYERYVVIQQGIAKKADGSDFDDKEFLTEEEYLDVLETLPIENQYLDD
SDPNKFVAKMGAEAVEELLKRIDLDSLSFDLRHKAHNESSKQRRTEALKRLNVVEALRAA
NTRMINKPEWMIMRVLPIIPPELRPLVPLDGGRFATSDLNDLYRRVIIRNNRLKRLLEIK
APEVILRNEKRMLQESVDSLFDNTRKSSAVKSESNRPLKSLSDSLKGKQGRFRQNLLGKR
VDYSARSVIVVGPSLQLHECGLPKDMAAELYKPFIIRKLIERGIVKTVKSAKRIIDRKEP
VVYDILENVMKGHPVLLNRAPTLHRLGIQAFQPKMIEGKAIQLHPLVTTAFNADFDGDQM
AVHLPLGPEAILEAQLLMLGSQNILNPANGSPITVPSQDMVLGLYFMTKEAHSTDDYKVK
GEGLAFYSPEEVEIAYAEGQVSLNAKVRCRLPIKENGEIVTRLTNTTVGRILFNQIVPKE
VGYIDELLTKKSLRNVIGQILADTDFPTTVKFLDDMKNLGYSNAFKGGLSFSLGDIVIPA
EKKTMVAAAVESVDEIKANYNMGLITDTERYNQVIDVWTNTNAGLTEMIMSRMKSDQGGF
NSVFMMLDSGARGSKEQIRQLSGMRGLMAKPQKAGSVGAEIIENPIVANFKEGLSILEYF
ISTHGARKGLADTALKTADAGYLTRRLVDVAQDVIITEDDCGTLRGTEVTALKKNDDIVE
RIADRILGRVSLHNIYHPETDELLANADELIVEAVAKQIEEAGIEAVEVRSPLTCEAKKG
ICAKCYGRNLATGKGIHMGEAVGVIAAQSIGEPGTQLTLRTFHQGGTAGNISENPSIVAK
RDGIVEMDEVRTIKSEDEEGNSADIVVSRSTEFRLVADNEARTPIMVANVPYGSVLSVKP
GDKVKKGDLIARWDPYNAVIIAETAGKVEYEDIIQGVSFQLEIDEQTGFEEKVISESRNK
KAVPTLKVVDSKGVEQKAYNLPVGAHLMVNDGEKIKAGKILIKIPRKSAKAGDITGGLPR
VTELFEARNPSNPAVVTEIDGVVSYGKIKRGNRELIVEAKTGEIKKYLVKLSNQILVQEN
DFVYAGDPLSDGSITPDDILRIKGPTAVQEYLVNEIQEVYRLQGVKIDDKHFEIIVRQMM
TKVSIVDGGDTQFLEGALEHKYDFLEENNRVFGLKVVVEPGDSKEFKAGQMITARELRDE
NSKLKREDLALVEVREALPATATPVLQGITRAALQTKSFMSAASFQETTKVLNEAAVSGK
IDFLNGLKENVIVGHRIPAGTGLKEYQNVIVGSRKEFEDIN
NT seq
4266 nt
NT seq
+upstream
nt +downstream
nt
atgtcaaataaaaataaaacaagtcgatttaataaaatcactattggtttggcttcaccg
gaatctattcttcaggaatcgagaggagaagttctaaaaccggaaacgatcaactaccgt
acgcacaagccggaaagagacgggttgttctgcgagaagatatttggtcctgtaaaagac
tacgaatgtgcttgtggaaaatacaaaagaatccgatacaaaggaatcgtttgtgacaga
tgtggggtagaagttacagagaaaaaagtacgtagagagagaatcggacacatcaacctt
gtggtgcctgtggctcacatctggtatttccgttctttaccgaacaaaattggttatctt
ttaggtattccttccaagaaattggatatgattatctattacgaaagatatgtagtaatc
cagcagggtattgccaagaaagctgatggctctgatttcgatgataaggaattcttgact
gaagaagaatatctggatgttttggaaacacttccaattgaaaatcaatatcttgatgac
tctgacccgaataaattcgtagcgaaaatgggagcagaagcggttgaagaattgttgaag
agaatcgatcttgattctttatcattcgatctgagacacaaagctcacaacgaatcttct
aaacaaagaagaactgaagcgcttaagagattgaacgttgtagaagcacttagagctgcc
aatacaagaatgatcaataagcctgagtggatgattatgagagttcttccgatcattcca
ccggaattgagaccattggttccattggatggaggacgttttgcaacgtcggatcttaat
gatctttacagaagggttatcatcagaaacaaccgtcttaagagactattggagatcaaa
gctccggaagtaatcttgagaaacgagaagcgtatgcttcaggaatcggtagattcatta
ttcgataatacaagaaaatcttctgctgttaagtcggaatccaacagaccattgaaatcc
ctttctgattcattgaaaggtaaacaaggtcgtttccgtcagaacttattaggaaaaagg
gtagattactctgcacgttcggttatcgtcgtaggacctagccttcagttgcacgagtgt
ggtcttccaaaagatatggctgcggaactttacaaaccgtttatcattagaaaactaatc
gaaagaggaattgtaaaaaccgtaaaatcagctaagagaatcatcgacagaaaagagcct
gtagtttatgatatcctggaaaatgtgatgaaaggtcacccagttcttttgaacagagca
cctacgcttcacagattgggtatccaggcattccagccgaagatgatcgaaggtaaagcg
attcagcttcacccattggtaacgacggctttcaacgccgatttcgatggtgaccagatg
gcggtacacttgccacttggaccagaagcaatcttggaagctcagttattgatgctaggt
tcacaaaatatcctaaaccctgcgaatggttcgccaattacggtaccttctcaggacatg
gttttgggtctttattttatgaccaaagaagcgcattctaccgatgattataaagtaaaa
ggagaaggcttagctttctattctccggaagaagtggaaattgcttatgctgaaggacaa
gtatctcttaacgctaaagtaagatgtcgtcttcctatcaaagagaatggagagattgtt
acaagattaacaaacacaactgttggtagaatccttttcaaccagattgtaccgaaagaa
gtgggttatatcgatgaattattgactaagaaatctcttagaaatgttatcggtcagatc
cttgcagacacggattttccaactacggttaagttcttggatgatatgaaaaacctcgga
tactctaatgcattcaaaggaggtctttcatttagtctaggagatatcgtgattccagcg
gaaaagaaaaccatggttgctgcggctgtagaatcggtagacgagatcaaggctaactat
aacatgggtcttatcactgatacagagcgttataaccaggtaatcgacgtttggaccaat
accaacgccggtcttactgaaatgattatgagcagaatgaagtctgaccaaggcggattc
aactctgtatttatgatgcttgattctggtgcgaggggttctaaggagcagatccgtcag
ttgtctggtatgagaggtttgatggcaaaaccacaaaaagctggttctgttggagcagag
attatcgaaaacccaattgtggctaacttcaaagaaggtctatccatcttagaatacttt
atctctacccacggtgctcgtaaaggtcttgcggataccgctcttaaaactgccgatgct
ggttacctaaccagaagattggtagacgttgcacaggatgttatcattacagaagatgac
tgtggaacattgagaggtacagaagttactgcacttaagaaaaatgatgatatcgtagaa
agaatcgcagaccgaattcttggtagagtatctcttcataatatttaccatccagaaaca
gatgaattattggctaacgctgatgagttaattgtggaagctgtagctaagcaaatcgag
gaagcgggaatcgaagctgtagaagttcgttctccactaacttgtgaagctaaaaaaggt
atctgtgctaagtgttacggacgtaaccttgcaacaggtaaaggcatccatatgggagaa
gctgtgggcgtgatcgctgcacagtctattggtgagccaggaactcagttaacattgaga
actttccaccaagggggtacagcaggtaacatctcagaaaatccaagtatcgttgcaaaa
cgtgacggtattgtggagatggatgaggttagaacaattaagtctgaagatgaagaagga
aactctgcagacatcgttgtttctcgttctacagaattcagattggttgcggataacgag
gcgagaactccaatcatggtggctaacgttccttacggttcggttctatctgtaaaacca
ggcgataaagtgaaaaaaggagaccttatcgcaagatgggatccgtataacgcggttatc
attgcggaaactgcgggtaaagtagagtacgaagacatcatccaaggagtttctttccaa
ttggaaatcgatgaacagactggtttcgaagagaaagtaatttctgaatctagaaataag
aaagctgttccaacattgaaggttgtagactctaaaggtgtggagcagaaagcttataac
ttaccagtaggagcccacttaatggtcaatgatggtgagaaaattaaggctggtaaaatc
ttaattaagatcccaagaaaatctgcaaaagcaggggatatcaccggaggtcttccgaga
gtaaccgaattgttcgaagcgagaaatccttctaaccctgcggtagtgacggaaattgac
ggtgtagtatcttacggtaaaatcaagagaggtaaccgtgaattgatcgtggaagctaaa
accggagaaatcaagaaatatcttgtgaaattatctaaccagattttggtacaagaaaat
gacttcgtttacgctggtgatccgctttccgatggttctatcacaccagatgatatcttg
agaatcaaaggtccaactgcagttcaagaatacttagttaacgagattcaggaggtttac
cgtcttcaaggggtaaaaatcgatgacaagcacttcgagatcattgttcgtcagatgatg
accaaagtatcgattgtggatggtggagatactcagttcctagaaggtgctcttgaacat
aaatatgacttcttggaagaaaacaacagagttttcggacttaaagtggttgtagagcca
ggagattctaaagagttcaaagcaggacagatgattactgcaagagaattgagagatgag
aattctaagctgaagagagaagatcttgcattagtagaagtgagagaagcacttcctgcg
actgcaacaccagtattgcaaggtattactagagcagcgttacagaccaagtcattcatg
tctgcagcatctttccaggaaacaaccaaggttcttaatgaagcggcagtttccggaaaa
atcgacttcttgaatggtcttaaagaaaacgtaattgtaggacacagaattcctgcaggt
acaggtcttaaggagtatcaaaacgttatcgtgggttctagaaaagaatttgaagatatt
aactag
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