Echinicola vietnamensis: Echvi_0442
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Entry
Echvi_0442 CDS
T02388
Name
(GenBank) DNA/RNA helicase, superfamily I
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
evi
Echinicola vietnamensis
Pathway
evi03420
Nucleotide excision repair
evi03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
evi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
Echvi_0442
03430 Mismatch repair
Echvi_0442
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
evi03400
]
Echvi_0442
Enzymes [BR:
evi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Echvi_0442
DNA repair and recombination proteins [BR:
evi03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
Echvi_0442
MMR (mismatch excision repair)
Other MMR factors
Echvi_0442
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
AAA_19
DEAD
ResIII
AAA_16
SLFN-g3_helicase
UvrD_C_2
nSTAND3
UvrD_C
GvpD_P-loop
AAA_29
Motif
Other DBs
NCBI-ProteinID:
AGA76728
UniProt:
L0FUM2
LinkDB
All DBs
Position
481687..483507
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AA seq
606 aa
AA seq
DB search
MSSEKFILTKEQHRILKDFHNQLIIGGPGSGKTTISILKAGQWVEKLKENQNVLFLSFAR
ATVSRVIEAIDEQSLLSKEIKKRINVDTYHAYFWKIIKTHGYLLGLPRKVSILTPSNEAI
TLSSIRNAYGKVKNLSDRQKEEKKQDEKDAIRKLAFEKGEIAFGLFAELTFSLLDNCNKI
LNLLANSYPVIILDEFQDTNFEQWKVIQSLGNRSIIIALADSEQRIFDFIGADPQRINHF
KKHFSPKEFDLRNENHRSRGTDITKFGNDILKGNFQDDYKGIKLFTFPSNNNQAFSELKI
RTIKARKRLIEKDVKDWTLAILVPTKKLMRQVSDFFNQKTQKLPAIHHHAVIDMHGAILA
ADVIAFLIQPKCNDNDLEQFVQLICNFFYGKGGDLPTKTDIAEASSIQKSFDKLYAKIKA
KEKTPKNSIINAIVEGYENCRKLKFTGNPYEDWLTVRDTLESSNCKRLKSIALEAKNLRL
LNRGTQLREALSQNWRDSGFYRNALDIVRQAFIAEHFSISQSPEKGVIVMNMHKAKGKQF
DEVIVFEGWPKWVRREIVSNPDRIVIGNKKSSDMTKYKYNLRVSVTRAKIRTTIMTPKDD
PCVLFL
NT seq
1821 nt
NT seq
+upstream
nt +downstream
nt
atgtcaagtgaaaaatttatattgacaaaagagcaacacagaattcttaaggatttccat
aatcagcttatcattggtggccctggttctggtaaaaccactatttctatattaaaagcg
gggcaatgggttgaaaaattaaaagaaaaccaaaatgtactttttttaagttttgcacga
gctacagtttcaagagttattgaggctattgatgagcaatcattattgtcaaaagaaata
aagaagagaattaatgttgatacttatcacgcttatttttggaaaattatcaaaacacat
ggatatttattgggtctaccaagaaaagtatccatcttaacgccttcaaatgaagcaatt
accttatccagtattagaaatgcatatggcaaagtaaaaaatttaagcgatagacaaaaa
gaagagaagaaacaggatgaaaaagatgctattaggaaacttgcatttgaaaaaggagaa
attgctttcggcctttttgcagaactaaccttttcacttttagacaactgtaataaaata
cttaacctattagctaattcataccctgtaataatattggatgagtttcaagatacaaac
ttcgaacaatggaaagtaatacaatccttaggcaatagaagtatcattattgccttggca
gattcagaacaaaggatttttgatttcataggagctgacccacaaagaattaatcatttt
aaaaagcacttttcaccaaaagaatttgatttaagaaatgaaaaccatcgaagtaggggt
acggatattactaaatttggtaatgatattttgaaaggcaattttcaagacgattataaa
ggaataaaactatttactttcccatcaaataataatcaggccttttcagaacttaagata
cgaacaattaaagcacgtaaaagattaatcgaaaaagatgtaaaggactggactttggct
atccttgtacctactaaaaaattaatgcgacaagtatcagacttttttaatcaaaaaact
caaaaattacctgcaattcatcatcatgctgttattgatatgcatggagcaattttagct
gctgatgtcatagcttttttaattcaaccaaagtgtaatgataatgatttagagcagttt
gttcagttaatatgtaattttttttatggtaaagggggggatttaccgaccaaaactgat
attgctgaagcatcgtcaattcagaaatcatttgacaaattatatgctaaaatcaaggca
aaagaaaaaaccccaaagaacagtattattaacgctattgttgaaggatatgaaaattgc
agaaaattaaaattcacaggtaatccatacgaagactggctaactgttagagatacttta
gaatcttcaaactgtaaaagacttaaaagtattgctttagaagcaaagaatcttagatta
ttgaatagaggaacacaactcagggaagcgttatctcaaaattggagggatagtggcttt
tacaggaatgcccttgatatagtgaggcaagcttttatagctgaacatttttcaatatct
caaagtccagaaaaaggtgtaatagtaatgaatatgcataaagcaaagggaaagcaattt
gatgaagtaatcgtttttgagggttggccaaaatgggtgcgtcgtgaaatcgttagtaat
ccagacagaatagtaattggaaataagaagagttctgatatgacaaaatataaatataat
ttaagagtgagtgtaacaagagcaaaaatacgcaccacaataatgacacctaaagatgac
ccatgtgttttatttctataa
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