Echinicola vietnamensis: Echvi_0511
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Entry
Echvi_0511 CDS
T02388
Name
(GenBank) DNA/RNA helicase, superfamily II
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
evi
Echinicola vietnamensis
Pathway
evi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
evi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Echvi_0511
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
evi03019
]
Echvi_0511
Enzymes [BR:
evi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
Echvi_0511
Messenger RNA biogenesis [BR:
evi03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Echvi_0511
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Helicase_C_2
AAA_19
ERCC3_RAD25_C
AAA_22
Phage_integrase
Cas3-like_C_2
UvrD-helicase
P-loop_SecA
Motif
Other DBs
NCBI-ProteinID:
AGA76795
UniProt:
L0FVU8
LinkDB
All DBs
Position
571483..572733
Genome browser
AA seq
416 aa
AA seq
DB search
MKFKDLRIIPPILKALEDKGYDEPTSIQAQAIPHILEGRDVLGCAQTGTGKTAAFAIPII
QHIHEAPYANEPWAKIRSLIVTPTRELAIQIGENIDEYAKNTNVSHTVIFGGVKQGAQVA
QLKKGVHILVATPGRLLDLIDQGHISLKAIDLFVLDEADRMLDMGFINDIKKLLKILPKK
RQSLFFSATMPDNILQLSKEILDNPQKVEVTPVSSTAETIQQYIYYTNKSSKKSLLIHIL
EKEGMDQVLLFSRTKHGADRIVRDLKKKHIKAAAIHGDKAQNQRQRVLSDFKDNKLRVLV
ATDIAARGIDIDKLKYVINFDIPDTPETYIHRIGRSGRAGEEGTAISLCEPEENADVKAI
EKLANKNITVISDHPFPQTDKPMTAQEKKEFNKEKQRRKQEFFANRKKNRGGAGRR
NT seq
1251 nt
NT seq
+upstream
nt +downstream
nt
atgaaatttaaagacctgaggatcattcctccaatattaaaagccttagaagacaagggt
tatgatgagcccacttctatccaagcgcaagctatcccccacattctcgaaggcagagat
gtcttaggctgtgcccagaccggcacgggaaaaacggctgcatttgccattccaatcatc
caacatatccatgaggctccctatgccaatgaaccttgggccaagattcgatccctgatc
gttacccctacccgggaattggccattcagatcggggaaaacatcgacgagtatgccaaa
aacaccaatgtcagccatacggtgatttttggtggcgtcaagcaaggtgcccaagtggcc
caacttaaaaaaggggtacacatcttggtggccacaccggggcgattgctggacctgatc
gaccagggccatatcagccttaaggccatcgacctgtttgtgctggatgaggcagaccgc
atgttggacatgggctttatcaatgacatcaaaaagctccttaagatcctaccgaaaaaa
cggcagtcgcttttcttttcggccaccatgccggacaatatcctgcaactttccaaggag
atcctggacaatccccaaaaagtagaggtcaccccggtatcttcaaccgctgagaccatt
cagcagtacatctactacaccaataagagcagtaaaaagtcccttttgatccatattctg
gaaaaagagggcatggatcaggtgctgctgttttcccgcaccaaacacggggcggacagg
atcgttcgtgacctcaagaaaaaacacatcaaagccgcagccatccacggggacaaagcc
caaaaccaacgtcaacgggtacttagcgattttaaggacaacaaattgcgggtattggtc
gcaacggatattgctgcccgaggcattgatattgacaaattaaaatatgtcatcaacttt
gacattccggacacccctgaaacctatatccaccggattggccggtcgggaagggctgga
gaagaaggaaccgccatttccctttgtgagccagaggaaaatgcagatgtcaaggccatc
gaaaaactggccaataaaaacatcacggtcatcagcgaccatccctttccccaaacggac
aagcctatgacggctcaggagaaaaaggaatttaacaaggaaaaacaacggcgcaaacag
gagttttttgctaaccgcaaaaagaaccgaggaggcgctggcagaaggtaa
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