Echinicola vietnamensis: Echvi_0807
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Entry
Echvi_0807 CDS
T02388
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
evi
Echinicola vietnamensis
Pathway
evi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
evi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Echvi_0807
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
evi03021
]
Echvi_0807
03019 Messenger RNA biogenesis [BR:
evi03019
]
Echvi_0807
Transcription machinery [BR:
evi03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
Echvi_0807
Messenger RNA biogenesis [BR:
evi03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
Echvi_0807
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
NACHT
AAA_25
AAA_22
OB_RNB
Mor
S1CSD-TOTE-2
Motif
Other DBs
NCBI-ProteinID:
AGA77082
UniProt:
L0FUW3
LinkDB
All DBs
Position
920207..921988
Genome browser
AA seq
593 aa
AA seq
DB search
MYNIEELKIRLLSELKEIAEELGVKNFKSLKKDDLIYAILDQQAITPEKALPKKKPAKAE
ADKPAPDTPEKKAEQKPDAEEGKDTKPKFKRQNVTESKKEDTPKAEEKPAKKPKEAPKER
KPRRSDAPKADNKPDSKPEKKAESKPEAKPDAQASDENRPRSFRPRRKAVIDEEAQRVAT
ERPQEQEVELPKRKNFKDISDEQPSQPTNGNSKKKYASLVKEFDGIIENEGVLEIMSDGY
GFLRSLDYNYLASPDDIYVSPSQIKLFGLKTGDNIKGQIRPPKEGEKYFALLKVASVNGK
TTEEIRDRIPFEYLTPLFPEERLNLTTRADNFSTRIVDLFAPIGKGQRGMIVAQPKTGKT
VLLQKIANAIAENHPECHLMILLIDERPEEVTDMARSVKAEVVSSTFDEQAERHVKVSSM
VLEKAKRMVECGHDVVILLDSITRLARAYNTVVPSSGKILSGGVDANALHKPKRFFGAAR
NVENGGSLTIIATALVETGSKMDEVIFEEFKGTGNMELSLDRKLSNRRIYPAIDVPGSGT
RREDLLMEKEEMQRVWILRKLMSDMTSQEAMEFLLQRMKGTRDNAEFLISMNG
NT seq
1782 nt
NT seq
+upstream
nt +downstream
nt
atgtataatattgaagaactaaaaattagattgctatccgagttgaaggagatagcagaa
gaactgggggtgaaaaattttaaatccctcaagaaggacgatctcatttacgcgatctta
gatcagcaagctatcaccccagagaaagcccttcccaagaaaaagccggcaaaggcagaa
gcagataaaccggcaccagacactcctgagaagaaggctgagcaaaagcccgatgctgaa
gaaggcaaggacaccaagcctaagtttaagcggcaaaatgtaacggaatccaaaaaagag
gacactccaaaagcggaagaaaaacccgccaaaaagccaaaggaagcgccaaaagaaaga
aagcccagaaggagtgacgctcccaaagctgacaacaagcctgacagcaaacctgaaaaa
aaggcagaaagcaagcctgaggcgaaacctgatgctcaagcttccgatgaaaaccgccct
agaagcttccgtcccagaaggaaagcagtgatcgacgaagaagcccagcgggtggcaaca
gaacgaccacaagagcaggaagtagagcttcccaaaagaaaaaacttcaaagatatctct
gacgagcagccttcccaacctaccaatggcaacagcaaaaagaaatatgcctctttggta
aaggaatttgatggtatcatagaaaatgaaggagtactggaaatcatgtcggacggatat
ggcttcttgcgttctcttgactataattacctggcttctccagatgatatttacgtatcc
ccatcccagatcaagcttttcggactgaagacaggtgacaatatcaaaggccaaatcagg
cctcccaaagaaggggaaaagtactttgccctgctgaaagtggcttccgtaaacggcaaa
accactgaagaaatccgtgatcggattccattcgaataccttacccctttgttcccagag
gaacggctgaacctgaccactcgggcggacaatttctccacgcgaatcgtggacttgttt
gcaccgatcggtaaaggccaacggggcatgatcgtcgcccagcctaaaaccggtaagacc
gttttgcttcaaaaaattgccaatgccattgctgaaaaccatccggaatgccatcttatg
atccttttgatcgatgaacgtccggaagaggtgactgatatggcccgctcggtaaaagca
gaagtggtttcttctacttttgacgaacaagccgaacgtcacgttaaagtatcgtccatg
gtactggaaaaagccaagaggatggtagaatgcggtcacgacgtcgtcatcttgctggat
tcgatcacccgactggcaagggcttataacaccgtggtgccttcttctggaaaaatcctt
tccggtggtgtggatgccaacgccctccacaaaccaaaacgattcttcggtgctgcccga
aacgtagaaaatggtggttccctgaccatcatcgccacggcactggtagaaaccggttcg
aaaatggacgaggtgatcttcgaagaatttaaaggtaccggcaacatggaactgagcttg
gacagaaaactttcgaacagacgaatctatccagccatcgatgtaccaggatctggtaca
cgaagggaagaccttttgatggaaaaagaagagatgcagcgtgtatggatcttgcgaaag
ctcatgtccgacatgacttcccaagaagccatggaattcctgctccaacgcatgaaaggt
acccgcgacaatgccgaattcttgatcagcatgaacggataa
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