Echinicola vietnamensis: Echvi_2020
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Entry
Echvi_2020 CDS
T02388
Name
(GenBank) DNA-directed DNA polymerase III PolC
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
evi
Echinicola vietnamensis
Pathway
evi03030
DNA replication
evi03430
Mismatch repair
evi03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
evi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
Echvi_2020
03430 Mismatch repair
Echvi_2020
03440 Homologous recombination
Echvi_2020
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
evi03032
]
Echvi_2020
03400 DNA repair and recombination proteins [BR:
evi03400
]
Echvi_2020
Enzymes [BR:
evi01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
Echvi_2020
DNA replication proteins [BR:
evi03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
Echvi_2020
DNA repair and recombination proteins [BR:
evi03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
Echvi_2020
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
RNase_T
tRNA_anti-codon
Intimin_C
Motif
Other DBs
NCBI-ProteinID:
AGA78273
UniProt:
L0FYZ7
LinkDB
All DBs
Position
complement(2371987..2376273)
Genome browser
AA seq
1428 aa
AA seq
DB search
MYIIFDTETTGLPRNYNAPVTDLDNWPRLVQLAWQLHDERGKLISNQNYIVKPEGFTIPY
NAEKVHGISTDRALKEGHDLKKVLEIFHKDVEKAQYLVGHNIGFDINVCGAEFLRVDLPM
QLLEKKELDTKDISTDFCAIPGGKGGKYKWPTLTELHQKLFGVGFEDAHDAAYDVDATAK
CFFGLITAKVQPPEDGIAVEEVIYEPPKLDAANFAAAKDQQKQAAQDIIKQARRADISDL
VDTPFSHLHVHTQYSILQATSEIPAMVARAKEFNMPAIAMTDHGNMMAAFHFVKAAMDND
IKPVVGCEFNICRDHQNKSQKDDGFQAVLLAKNKTGYHNLAKLASFAYTQGFYYVPRIDK
ELLVQYKGDIIATTGGLWGEVPFLILNVGETQAEEAFVWWKEQFGEDFYVELNRHGIPEE
EKVNEVLLRFAQKYDVKYFAANNTYYNTKNDAKAHDILLCVKDGEKVDKPKRYIGKKGRE
FRYGFPNEEFYIKTPEEMKKLFADLPEAIECTNEIIEKVEPYKLAREVLLPKFNIPEQFQ
DPQDDEDGGKRGENAYLRHLTYEGAKRRYPEITEEIRERLDFELSIIANTGYPGYFLIVQ
DFTTAAREMGVSVGPGRGSAAGSAVAYCIGITNVDPVAYDLLFERFLNPDRVSLPDIDID
FDDHGRQKVIDYVIEKYGANQVAQIITYGTMAAKSAIRDTARALDLPLSDADRLAKLVPD
IKLKALFGLANDRGKLAEKLKNNSENIDKAYELINISKGNDDLSKTINQAKILEGSVRNT
GIHACGVIITPDDITNFVPVALAKDSDMYCTQFDNSVVENAGLLKMDFLGLKTLTLIKDA
VRIVKERHGIELDPENFPIDDKETYELFQRGETVGIFQYESPGMQKYMRELKPTVFADLI
AMNALYRPGPLEYIPSFIKRKHGLEPIAYDLDDMEEYLQETYGITVYQEQVMLLSQKLAG
FTKGEADVLRKAMGKKLRDVLDKMKPKFVNQAAEKGHDKAKLEKIWKDWEAFASYAFNKS
HSTCYAWVAYQTAYLKAHYPAEYMASVLSNNMNDITQVTFFMEECKRMGIEVLGPDVNES
KDGFTVNQEGQIRFGLAAIKGAGGAAVHSVIEERAENGPYKSIFDFTQRVNLRSVNKKTL
ESLAMAGGFDCFPDHHRRQYLEAPENDATLIEKAVKYAQKKAQEAESSQVSLFGGGSGME
VPMPSITPIEPFSQLQQLNIEKEVVGLYISGHPLDQFKVEFDSFTNTPLSEFANTEALKT
KGEIKAAGVVTSFAHRTTKNGNPFGTLTLEDYNGGHTFFLFGEDYIKYKEYFMTGWFLYV
TGSVQGKRWNPDELEFKVGNIMLLNEVRGKMVKGLRLNISLDDLTLDLMERLEAITSKYK
GEAKLYINVTDVKERIAVDLRSTKFLIDPSQDMIKALEDIPEVQYKIL
NT seq
4287 nt
NT seq
+upstream
nt +downstream
nt
atgtacattatttttgataccgaaaccactggtttacccagaaattacaatgcccctgtc
accgatctggacaactggccgcgactggtccagctggcatggcagctgcatgatgagcgg
ggcaagctgatttcaaatcaaaattacattgtcaaaccggaaggctttaccattccatac
aatgccgaaaaggttcacggaatctctactgaccgggcattaaaggaagggcatgacctg
aaaaaagtcttggagattttccataaggatgtagagaaagcccaatacttggtcggtcat
aatattggttttgacatcaatgtttgcggagcggaatttttacgcgtggacttgcccatg
cagctcttggaaaagaaagagctggataccaaggacatctccacggatttctgtgcgatc
ccaggtggaaaaggcggaaagtacaaatggcccaccttgaccgaactgcatcagaagctc
tttggtgtaggcttcgaggatgcccacgatgctgcctatgacgtagatgccacggccaaa
tgtttctttgggctgatcacggccaaggtgcagcccccagaggacggaattgccgtagag
gaagtcatttacgagccaccaaagctggatgctgccaactttgctgcagccaaagaccag
caaaagcaggcggctcaagatatcatcaagcaggcccgaagagcggacatcagtgattta
gtggacactccttttagccacttacacgttcacacgcaatattccattctacaggccaca
tctgagattcccgccatggtcgcaagggcaaaggaatttaacatgccggccattgccatg
accgatcatggcaacatgatggctgctttccacttcgtaaaagcagccatggacaatgac
atcaagccagtagtgggctgcgagtttaacatttgtcgggaccatcagaacaagtcccag
aaagacgatggtttccaagctgtattgctggccaaaaacaaaacaggatatcacaatttg
gccaagctggcatcatttgcctatacccaaggcttttattatgtacctcggatagacaag
gaactgttggtccaatacaaaggggacatcattgccaccacaggaggactttggggtgag
gtaccgtttctgatcctgaatgtgggagagacgcaagcggaagaagcttttgtttggtgg
aaggagcagtttggagaggatttttatgtggagctgaaccgccacggcattcctgaagaa
gaaaaagtaaacgaagtgctcctgcgctttgcccaaaaatacgatgtcaagtattttgct
gccaataacacctattataacaccaagaatgacgccaaggcgcacgatatcctactttgt
gtaaaggacggagagaaagttgacaagcccaaaaggtatattggcaaaaaaggcagggaa
tttcgctatggttttccaaatgaggaattctatatcaaaacgccagaggagatgaaaaag
ctctttgcggacctgcccgaagccatcgaatgcaccaatgaaatcattgaaaaggtagag
ccctataagctggcgagagaagttttacttcctaaattcaacatcccggaacagtttcaa
gaccctcaagacgacgaagatggcgggaagcgtggagagaatgcctatttgcgacacctc
acctacgaaggagccaaaaggcggtatcctgaaatcacagaggaaatcagggaacgactg
gactttgaactttccattattgcgaatacaggatatccagggtatttcttgatcgttcag
gactttacgaccgcggcacgcgaaatgggtgtgtcagtagggccaggccggggatctgct
gcgggctcggccgtcgcctactgcatcggcatcaccaatgtggacccagtcgcctacgac
ctcctttttgagagattcctcaacccggacagggtttcccttcccgatattgatattgac
ttcgatgatcatggtcgccagaaagtcatcgattatgtcatcgaaaaatacggtgccaat
caggtggctcagatcattacctacggtaccatggcggcaaaatctgccattcgtgatacg
gcaagggctttggacctaccgctctcagatgcagaccgtctggccaagctggtacccgac
ataaagctcaaagcactttttggcttggcaaatgaccggggaaagttagctgaaaagctg
aaaaacaattcggagaacattgataaagcttacgagctgatcaatatctccaaaggtaat
gacgacctttccaagaccatcaatcaggccaagatcctggaaggctccgtccggaatacc
ggcatccatgcctgtggggtgatcatcaccccggatgacatcacgaattttgtcccggtg
gccttggcgaaggactcagacatgtactgtacgcagtttgacaactccgtcgtagagaat
gccggcctactgaaaatggactttttgggcttaaagacccttaccctgatcaaggatgcc
gtgcgcatcgtgaaggaacgtcacggcatcgagctggatcctgagaacttccctatcgac
gacaaagaaacatacgagctcttccaacgtggagaaacggtagggatcttccagtatgaa
tcccctggcatgcagaaatacatgcgtgagctaaagcccacggttttcgcggatttgatc
gccatgaacgccctttaccgtccaggaccgctggagtatattccgagttttatcaagagg
aaacatggcttagagcccattgcctatgacctggacgacatggaagaatacctccaagag
acctatgggattacggtttaccaggaacaggtgatgttgctttctcaaaaactcgcggga
tttaccaaaggtgaagccgacgtcttgcggaaagccatgggtaagaagctccgtgacgtg
ctggataagatgaagccgaaatttgtcaaccaagccgcagaaaaaggccatgacaaagcc
aagctcgaaaaaatctggaaggattgggaagcctttgcctcttatgcctttaacaaatcg
cactccacctgttatgcctgggtggcctaccaaacggcttacctaaaagcccattaccct
gcagagtacatggcatctgtcctgagcaataacatgaatgatatcactcaggtgaccttc
ttcatggaagagtgcaagcggatgggaatcgaagtgcttggcccggatgtgaacgaatcg
aaggatggctttacagtaaaccaagaaggccaaatccgctttggactggctgccatcaag
ggggctggtggtgcggcggtacattccgtgatcgaagaaagagcagaaaacggcccctat
aaaagcatttttgattttactcaacgggtaaatctgcgctcggtcaacaaaaagacttta
gaatcactggccatggcaggtgggtttgactgcttccctgaccaccacagacgccaatac
ctggaagctccggagaatgatgcgacgctgatagaaaaggcggtaaaatacgcccagaag
aaggctcaagaagcagaaagctctcaagtatccctctttggaggaggatcgggaatggaa
gtccccatgcccagcattacccctatagagccttttagccaattgcaacagctaaacatt
gagaaggaagttgtggggctttacatctcaggtcatccgctggatcagttcaaggtggaa
tttgattcctttaccaacacaccactgtcagaatttgccaacaccgaagccttaaaaacc
aaaggggaaataaaagcagctggagtggtcacctcttttgcgcaccggacaaccaaaaac
ggaaatccttttggtaccctgacattggaggattacaatgggggacatactttcttcctt
tttggtgaggattatatcaagtacaaggaatacttcatgacgggatggttcctctatgtc
accggtagtgtgcagggaaaacggtggaatcctgatgagctggagtttaaagtaggcaac
atcatgctcctgaatgaagttcgaggcaaaatggtcaagggccttcgcttaaacattagc
ttggatgaccttaccctggacttgatggaaaggcttgaagccattacctccaagtataaa
ggagaagcgaaattgtacatcaatgtcacggatgtcaaggaaagaattgccgtggatttg
aggtcaaccaagtttttgatagatccttctcaagacatgatcaaagcactggaagacatt
ccagaagtacaatacaaaatcctttaa
DBGET
integrated database retrieval system
