Echinicola vietnamensis: Echvi_4035
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Entry
Echvi_4035 CDS
T02388
Name
(GenBank) Excinuclease ATPase subunit
KO
K03701
excinuclease ABC subunit A
Organism
evi
Echinicola vietnamensis
Pathway
evi03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
evi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
Echvi_4035
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
evi03400
]
Echvi_4035
DNA repair and recombination proteins [BR:
evi03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
Echvi_4035
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
Echvi_4035
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ABC_tran
UvrA_DNA-bind
SMC_N
AAA_21
DnaJ_CXXCXGXG
AAA_29
nSTAND1
AAA_16
RsgA_GTPase
AAA_23
nSTAND3
AAA_22
ATPase_2
AAA_33
NACHT
NB-ARC
DUF4350
NTPase_1
RapZ-like_N
GCN5L1
AAA_24
Anti-TRAP
Motif
Other DBs
NCBI-ProteinID:
AGA80242
UniProt:
L0G3X9
LinkDB
All DBs
Position
complement(4832605..4837092)
Genome browser
AA seq
1495 aa
AA seq
DB search
MRITDAHQNNLKNVSLDLPENRLIVVTGLSGSGKSSLAMGVIANEGYRYFLESLPAYNQQ
HAQAIPTAEVEHISALPPVIKVEQSKRFQSINATFGTLSELTPLFRVLFARYAGEETMSK
SLFSFNHPKGACEHCRGIGEAEYIDIHKLVGDENKTLREGAITTTLPNGYIVYSQVTVEE
LNKVCAAHGFSVDVPWKDLSKEQQDVILYGSDRIKVFYGKHSLESRLRWEGFKAKPREEG
YYKGIIPIMSDILRLDRNVSILRFVSAKICPSCHGARIKAEHLRYRWKGLNFQEWMDLSL
QQLYDRLQAQSLSGGEKVLVDKLCTQLLDLIRLGMEHYQLSTSSMDISSGDGQRIKLIKQ
VNSSLQGILYVFDEPSIGLPAAYQQHLRHIFDRLILRGNTVMVVEHDLNFIQSADWVVEL
GPKAGIEGGEVIFNGSIDSFLTADPAKSPTLTAIQNQNEPSRKPAASQQVNAFQPQPQTL
SVVSRKTGKLLETITAFCDQQGLTFLTVTDQPIGKTPRSNPSTYTGLADGIRDLLAKTST
AKSLKLAKSAFSFNNKSGRCPNCEGAGVITLSMSVMGNINQVCPVCQGKRFKPDVLKVSW
QGKNIAEIYDLSIREAAEFFAEEKKLANILALMLQLGLGYIKLGQPSNTLSGGEAQRIKL
TKHFAKPSKKTVLLLEEPSIGLHQQNVQQLMDALNQLKKQTAGIVCFENHQLFQSQCDVW
VDNALAAQPTAIPLPPAQRRDIIAIHGARTHALKDISLEFPKEHLSVVTGISGSGKSSLV
IDTLHGFGLQEMTKQFSSYQQSRVGVNFQLEVDYIEGLTPSICITRKEKSFSERSDVAQQ
TDFDKTLRFAFSRKAQYTGLDWSASHFSNNHELGKCGICDGVGQELLPDLDKMVLDGGLS
INDGLFEHHKGLAYYGQASGQYMAVLGEVGKAYGFDLNTPFNELTPVQKDVIFKGVEGKT
WEATWKFRTKTREGTQQVNMKWSGLFKYLMDEYFLTRKNKYQPLKSLLSYNECSHCQGSG
LQPERLAVQIGGNSIHALKSMDFKKLDHWLKNVGATESIDQQLIGNVKANLANTLKRAKQ
LHIDHLQLNRKSATLSGGEQQRVTLIKQLNSPLKGITYLLDEPSAGLSADNIPDLVQLLR
ELVEKGNTVIVIEHNKEIMLAAEKLVEIGPQAGQEGGYITFHGSPAAFLERPDSHPFLKR
PAQPLTLATGNQTILLKDLARHTLVKKSLEVSVGGITAITGKSGIGKTTLVKDVLIPSIE
QEHPVNCAAITWPKAYSGAQYFEPKKLQAHNRTLLVDYLDLLKDICKVFSKETGRKARDF
SYKNKASQCPNCKGAGVVSTSLDVAANHIETCEVCHGQRYQANLLEYRVGGLHIAEVLAL
SVRELRSWLADHQVATSRETFIQQLDAIGLAHLRLDQAVKSLSSGEKQRLLLLHWLKSKT
RDQLLILDEPSTGLHYADIDLLFEILSSLSRDNDILVIDHNPYLLEKIGVGVVLA
NT seq
4488 nt
NT seq
+upstream
nt +downstream
nt
atgcgcattaccgacgcccatcaaaacaaccttaaaaatgtttcattggaccttcccgaa
aaccggttgattgtcgtcaccggactgtcgggatcaggaaaatcctccttggccatgggg
gtgattgccaatgagggatatcgctattttctggagagcctgccagcctataaccagcag
catgcccaagccattcctacggccgaggtggagcatatttcggccttgcctcctgtcatc
aaggtggaacagtccaagcgattccaatccatcaatgcgacgtttggaaccctctcggag
ttgacaccgctgtttcgggtgctgtttgcgcggtatgcaggggaggagaccatgagcaaa
tcccttttttcatttaaccaccccaaaggagcctgcgagcactgtcgtgggattggtgag
gcggaatacatcgatatccataaattggtgggggacgaaaacaagacgctgcgggaagga
gcgattacgaccaccctgcccaatggatacatcgtctattcccaagtgacagtggaggag
ctgaataaggtatgtgcggcacatggattttcagtggatgttccgtggaaggaccttagt
aaggagcagcaagacgtcattttatatggcagcgatcggatcaaggtattttacggaaag
cacagcctggagtcgcgcctcaggtgggaggggtttaaggccaaaccccgcgaggaagga
tattataaaggaattattccgatcatgtcggatatcctgaggctggatagaaatgtgagt
atcctacgttttgtgagtgccaaaatatgcccgagctgtcatggagcaaggataaaggct
gagcacctgaggtaccgatggaagggattgaactttcaggaatggatggacctttccttg
cagcagttgtatgaccgtttgcaagcacagtccttgtccggtggtgaaaaagtactggtc
gataagttgtgtacccaactgctggaccttatccggctgggaatggagcattatcagctg
agtacttccagtatggatatttcttccggagatggccagcggataaagttgatcaagcag
gtgaacagtagtcttcaagggattttatatgtatttgatgaaccttctatcggtcttcct
gcagcttatcagcagcatcttcgccatatttttgaccgattgatccttcggggaaacacg
gtgatggtggtggagcacgacctgaattttatccaatcggcagattgggtggtggaattg
ggccccaaagcaggaatagaagggggagaagtgatctttaatggctccatagattcattt
ttaacagcagatcccgctaaaagcccgaccttgactgcgattcaaaatcagaatgagccg
tccagaaaaccggcagcatcccagcaggtcaatgcttttcagccccagccgcagaccttg
tccgtcgtcagtcggaaaaccggcaagctgttggaaacgatcactgctttttgtgatcag
caagggttaaccttcctgaccgttaccgaccagccaattgggaagactcctcggagcaat
ccttctacttacaccggcctggccgatggcattcgggatttgttggccaagacctcaacg
gcaaaatcgctaaaattggcgaaaagtgctttttctttcaataataaaagtggccgctgt
cccaactgtgaaggagcgggcgtcattaccctgtccatgagcgtgatgggaaatatcaac
caggtatgcccggtctgtcagggcaagcgctttaaacctgacgtattaaaagtctcatgg
caggggaaaaacatcgcagaaatctatgacctgagtatccgggaagcggctgagtttttt
gccgaagaaaagaaattggccaatatattggccttgatgctgcagcttgggctgggatac
atcaagctgggacagccttccaatacgctgtcagggggtgaagcgcaacggatcaagctg
accaagcattttgccaaaccttccaaaaagactgttttgctgctggaagagcccagtatt
ggcctgcaccagcaaaatgtccagcaactgatggatgccctgaaccagctaaaaaagcaa
accgccggcattgtatgctttgaaaaccaccagcttttccaatcccaatgtgatgtctgg
gtggataatgccttggccgcccagccaacggctattccattgccaccagcacagcgacgg
gacatcatcgcgatccacggtgcccggacccatgccctcaaagatatcagcctggaattt
cccaaggaacatttgtcagtggtaacgggcatttccggctctggaaaatcatcattggtc
atcgacaccctgcacggatttggcctgcaggaaatgaccaaacagttttccagctaccag
caatcaagggtcggagtaaatttccagttggaagtggattatatcgagggccttacccca
agcatatgcatcacccgaaaagaaaagagcttttccgaacggtcagacgttgcccagcaa
acggatttcgacaaaaccttacgttttgccttttccagaaaggcacaatacaccggtttg
gattggtcggcaagtcatttttcaaacaatcatgaattaggtaaatgcgggatttgtgac
ggggtaggacaggaattgcttcctgaccttgataaaatggtgttggatggaggcttaagc
atcaacgatggactgtttgagcaccataagggcctagcctactatggccaggcgagtgga
cagtacatggccgtgttaggggaagtcggtaaagcatacggatttgacctgaatacccca
ttcaatgaattgactcctgttcaaaaagacgtcatattcaaaggagtggaaggaaaaacc
tgggaagcgacctggaagttcaggacaaaaacccgagaaggtacccagcaggtaaacatg
aagtggagcggtcttttcaaatacctgatggatgagtactttctgacccgaaagaacaaa
taccaaccgctgaaatccttgctttcgtacaatgagtgcagccattgtcagggaagtggc
cttcagccagaaaggttagcggtgcagatcggtgggaattccattcatgccctgaaatcc
atggatttcaagaagcttgaccattggttaaagaacgttggggctaccgaaagcatcgat
caacagctgatcgggaacgtcaaggcgaatttggccaatacccttaaaagggcgaagcaa
ttgcatatcgaccacttgcaactgaaccgaaagtcggctacgctcagtggaggggagcag
cagcgcgtcacgctgatcaagcagctcaacagtcctctcaagggaattacttacctgctg
gatgagccgtctgcgggactgtcggcagacaatattcctgatttggtgcagctcctgaga
gaattggtggaaaagggcaataccgtgatcgtaatcgagcataacaaggaaataatgctg
gctgcggaaaaactggtggaaattggcccccaagcgggacaagaagggggatatataacc
ttccacggtagcccagcggcatttttggaacggccggatagccatccatttttaaagcgg
ccagctcagcccctgactttagcgacaggaaatcagacgattttattgaaggatctggcg
cggcacacgttagttaaaaagtcattggaagtatctgttgggggcattacggccattacg
ggtaagtccggcattgggaagacgaccttggtaaaggacgtcttgattccaagtatcgaa
caggaacatccggtgaactgcgcagccattacttggcccaaagcatacagcggtgcccag
tattttgagccaaaaaagttgcaggcccataaccgtaccttattggtagattatttggac
ctattaaaagacatctgtaaggtcttttccaaggaaacaggacgaaaggcaagggacttt
tcctataaaaacaaagccagccaatgccccaactgtaaaggagccggtgtggtatccacc
agtttggatgtagcagccaaccatatcgaaacatgcgaggtttgccacggccagcggtat
caggccaatttattggaataccgcgtaggaggattgcacattgccgaagtgctcgccctg
tccgtccgtgaattgcgaagttggttggccgatcaccaagtagctacttcgagagaaacg
tttatccagcaactggacgccattgggttggcccatctccggttggatcaagcggtaaaa
tccctctcatcaggtgagaagcaacgattgttactgctccattggctcaaaagcaagacc
cgggaccagctattgattttggatgagcccagcacgggactgcactatgccgatatcgac
ctgctttttgagatcctttccagcttaagccgcgataacgatatcttggtcattgaccac
aatccttatttattggaaaaaattggggtgggcgtggtcttagcgtga
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integrated database retrieval system
