Eubacterium ventriosum: NQ558_01345
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Entry
NQ558_01345 CDS
T08741
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
evn
Eubacterium ventriosum
Pathway
evn03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
evn00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
NQ558_01345 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
evn03400
]
NQ558_01345 (mfd)
Enzymes [BR:
evn01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
NQ558_01345 (mfd)
DNA repair and recombination proteins [BR:
evn03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
NQ558_01345 (mfd)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
TRCF
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
Cas3-like_C_2
AAA_22
UB2H
UvrB_3rd
CAMP_factor
Mfd_cyano
ERCC3_RAD25_C
RecG_dom3_C
ATPase_2
Motif
Other DBs
NCBI-ProteinID:
UWP36243
LinkDB
All DBs
Position
complement(311627..315133)
Genome browser
AA seq
1168 aa
AA seq
DB search
MKSFDYPLLQLNEFEQVKVCLSEHKSCQVTGCGESQLAHFINGLSNGYKQKVIVTFSATK
ASQLYQDLKGFADDVVMYPAKDFIFFSADVHGNLILQQRLEFIQKIVEDKPFTVILTPDA
FMDKIMPIEKIKNNYLEIAEGSIIQMDALKSKLVQMGYEPVVQIDGPGQFAVRGSIVDIY
TLTDEVPYRIDFWDDEVDIIKSFEVESQRSIENLESVKIYPASEYSLTKKEIQAGMAKIR
QDLDQNVEKFRKDFKTEEANRLRVTVEEFLTNMDINPSQVAVDSYVNYFYDNLVSLLDYF
ENPIFFIDEPKRVTEQLNVVDAEFGDSMANRLQKGYVLPGQTDVIWDKNQIIAKIDSGEK
VLFTAIAQKIQGFSVDDFVEVGSRNVSPYNGKFEILVQDLKKYKEQKYAVLLVTGSKTRG
QRLAEDLREFEISAFFEEDGERQVMPGEVMIIKGQLRSGFMYPMIKFVAISDTDIFGEKK
KRKRRKHGYSGTNISSFTDLNIGDYVVHENHGLGVYRGIEKIEVDHIVKDYIKIEYAKGS
NLYVLATQLDMIQKYADSTAKPPKLNTLGGQEWKKTKTRVKKAVADIAKELVQLYAIREN
SNGYQFSPDTEWQKEFEEMFPFEETDDQLNAISEVKKDMESTKIMDRLICGDVGFGKTEV
AIRAAFKAVQDDKQVAYLVPTTVLAQQHYKTFKQRFKDFPVRVEMLSRFRTKSNIDKTIK
DLNKGYVDVVIGTHRMLSKDVKFKDLGLLIIDEEQRFGVKHKEQIKELKNNVDVMTLTAT
PIPRTLHMSLIGIRDMCVMEEPPQERMPIQTFVMEYNEEIARDAINRELARGGQVYYVYN
RVQDIAEMAGKVQALVPDASVAFAHGQMSERQLEEIMYDFVNGDIDVLVTTTIIETGLDI
PNANTIIIHDAEKMGLSQLYQLRGRVGRSNRTSYAFLMYSRNKMLTEVAEKRLGAIRDFT
ELGSGVKIAMRDLEIRGTGNLLGAAQSGHMEDVGYDLYCKMLNDAINTLKGNKPMDDFET
KVDLTVDAFVPPSYIKNEALKMDIYKRIAGIETMEEYEDMQDELLDRFGDIPNQVENLLQ
IVLLKNAAHQAYVTEISGHKNRIKLTMWKDAEVDVERIPILVREYKGRLKFMPKDEPYFI
FEPKPGTGTVIENARKLVESLSTLKDEE
NT seq
3507 nt
NT seq
+upstream
nt +downstream
nt
atgaaaagttttgattatccactattacaattaaatgagtttgagcaggttaaggtctgc
ttgtctgaacacaaatcctgtcaggttacagggtgtggggaatcccagcttgctcatttt
attaatggattgagcaatggctacaagcagaaagtcattgttacttttagtgcaacaaaa
gcaagtcagttgtatcaggatttaaagggctttgcggacgatgttgtaatgtatcctgca
aaggattttattttctttagtgcggatgtacacggaaatcttatattgcaacaacgactt
gaatttattcaaaaaatagttgaagataagccatttacggtaattttgacgccggatgcc
tttatggacaagataatgccaattgaaaaaattaaaaataattatcttgaaatagcagaa
ggcagcataattcagatggatgccttaaagagcaagcttgtgcagatgggatacgagccg
gttgttcagattgatggaccgggacagtttgcggtgcgaggaagtattgttgatatttac
acgctgacagatgaggtgccttatcgaattgatttttgggacgatgaggttgacataata
aagagttttgaggtggaaagccagcgttcaattgagaatcttgaatcggtaaaaatttat
cctgccagcgaatattcactgactaagaaagaaattcaggcgggaatggcgaagattcga
caggatttagaccaaaatgttgaaaaattcagaaaagattttaagacggaagaggctaac
agacttagagttacagttgaagagtttcttacaaatatggatattaacccaagtcaggta
gcagtagatagttatgtaaactatttttatgataatttggtaagtctgcttgactatttt
gaaaatccaatattttttattgatgagccaaagagggtaacggagcaacttaacgtggtt
gatgcggagtttggagatagtatggctaaccgccttcagaaaggctacgtgcttccgggg
cagacagatgtaatttgggataaaaatcagataattgccaagattgatagtggcgaaaaa
gtcctatttacagcaattgcccagaagattcagggatttagcgtggatgattttgtggaa
gtgggatcaagaaacgtaagtccatacaatggcaagtttgagattcttgttcaggattta
aaaaaatataaagagcaaaaatatgcggttcttcttgtaaccggttcaaaaacaagaggc
cagcgtttggcggaggatcttagagagtttgagattagcgcatttttcgaagaagacggg
gaacgtcaggttatgcctggtgaagttatgattataaaaggtcagcttcgcagtggtttt
atgtatcctatgattaagtttgtggctatttcagacacggatatttttggcgaaaagaag
aaaagaaaacgtagaaagcatggctattcaggtactaatatttcaagttttaccgacctt
aacattggtgattatgttgtccacgaaaaccacggacttggtgtttatcgtggaatagaa
aaaatagaagtagaccatattgtaaaggactacattaagattgaatatgccaagggcagc
aacctttatgtgttagcaacccagcttgatatgattcaaaaatatgctgacagcacggcg
aaaccgcctaaacttaacacattaggtggccaggaatggaaaaaaacaaagaccagggtt
aagaaggctgttgcggatattgcgaaggagcttgttcagctttatgcaataagggagaac
agcaacggatatcagttttctcctgacacggaatggcagaaggaattcgaggaaatgttt
ccatttgaggagacagatgatcagcttaatgccatatctgaagtaaaaaaagacatggaa
agcacgaaaattatggacagactgatttgcggagacgtaggttttggcaagacagaagtg
gcaattcgtgcggcttttaaggcagtgcaggatgacaagcaggtggcttatcttgttcca
acaacggttttggcccagcagcactacaaaacttttaagcagagatttaaggatttccct
gtcagagtggaaatgctttcaagatttagaacaaaatcaaatattgataaaacaataaaa
gatttgaataaaggttatgttgacgttgttatcggaactcatcgtatgctttcaaaagat
gttaaatttaaggatttgggacttttgattattgatgaagagcagagatttggcgtaaaa
cataaggaacagattaaagaattgaaaaataatgttgacgtaatgactcttacagcaact
ccgattccaagaactcttcatatgagccttattggaataagagatatgtgcgtaatggaa
gaaccgcctcaggaacgtatgccaatacagacttttgttatggagtacaatgaggaaatt
gcaagggatgccataaacagggagcttgcaagaggcggtcaggtttattacgtgtacaac
agggttcaggacatagctgaaatggcaggaaaagttcaggcacttgtgcctgatgccagt
gttgccttcgcacacggacagatgagtgagcgacagcttgaagaaataatgtatgatttt
gttaacggggacattgatgttcttgtaacaactacaataatagaaacaggtcttgacata
ccaaatgccaataccattataatacacgatgcagaaaaaatgggcttgtcccagctttat
cagcttcgtggccgtgtaggccgttcaaaccgtacatcgtatgcttttttgatgtatagc
agaaacaagatgcttacggaagttgcggaaaagcgacttggggcaataagggattttacg
gaacttggcagtggtgtaaaaattgcaatgcgagaccttgaaatccgtggtaccggaaat
cttcttggggctgcacaaagcgggcatatggaggatgttggttacgacctttattgcaaa
atgcttaacgatgccattaatactttaaagggcaacaagccaatggatgattttgaaaca
aaggtagacctgacagtggatgcttttgttccaccttcatatattaaaaatgaagctctt
aaaatggatatttacaagcgaattgcaggaatagagacaatggaagaatacgaggatatg
caggatgaacttcttgaccgtttcggagacataccgaatcaggttgaaaaccttctccag
attgttttgcttaaaaatgcagcacatcaggcatatgttactgaaatttcaggtcataaa
aacagaatcaagcttacaatgtggaaagacgctgaggtggatgtggaaagaataccaatt
cttgtccgcgagtacaaaggcagacttaagtttatgcctaaagacgaaccgtattttatt
tttgagccaaaaccgggcacaggcacagtaatagaaaatgcaagaaaactggtagaatca
ctgtctacattgaaggatgaagaatag
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