Enterobacter hormaechei subsp. xiangfangensis: BFV63_08160
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Entry
BFV63_08160 CDS
T04821
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
exf
Enterobacter hormaechei subsp. xiangfangensis
Pathway
exf03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
exf00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BFV63_08160
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
exf03019
]
BFV63_08160
03009 Ribosome biogenesis [BR:
exf03009
]
BFV63_08160
Enzymes [BR:
exf01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
BFV63_08160
Messenger RNA biogenesis [BR:
exf03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
BFV63_08160
Ribosome biogenesis [BR:
exf03009
]
Prokaryotic type
rRNA processing factors
BFV63_08160
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
PNPase_C
S1
Motif
Other DBs
NCBI-ProteinID:
AOP90881
LinkDB
All DBs
Position
complement(1729644..1732760)
Genome browser
AA seq
1038 aa
AA seq
DB search
MKRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDY
GAERHGFLPLKEIAREYFPANYNSHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFI
SLAGSYLVLMPNNPRAGGISRRIEGDDRTELKEALASLELPDGMGLIVRTAGVGKSAEAL
QWDLSFRLKHWEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELA
RQHIAALGRPDFTSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDTTEALT
AIDINSARATRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVE
NRLREAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLS
LSILRLIEEEALKENTKEVHAIVPVPIASYLLNEKRAAVSAIEARQGGVRCIIVPNDEMQ
TPHYHVLRVRKGEETSTLSYLLPKLHEEEMALPSDEEPAERKLPEQPALATFIMPEAPPE
ATLEKPAAKPAVQKAAPAVPKAQPEQPGLLSRIFGALKKMFAGEEVQPEQPKEAPKEAKP
ERQQDRRKRQNNRRDRNDRNDRSDRNERRDNRSENNEGREQREDNRRNRREKQQQNVEDR
EIRQQAGDESEKSKQRDEQQPRRERNRRRNDEKRQAQQEVKNLNREAPVEQQDTEQEERT
QVMPRRKQRQLTQKVRVGAVQAEENDVIAVEAAESTTGTQVAKVDLPAVVENQVEQDESS
ENRDNAGMPRRSRRSPRHLRVSGQRRRRYRDERYPTQSPMPLTVACASPEMASGKVWIRY
PVARPEQAIEEQAVTQEVIAPVAAVEDVVTEAATVVEPQVVDTAAPQAVEVETTHPEVIA
APVDAAPQIIAEEDTVVAEEVAEDAEPVSAAEETADVAVETVTEEVVQDVEIQVEPVVEE
VKAPEVKSEPIEVVAAVAPAHVATAPMTRAPAPEYVPEAPRHSDWVRPAFNFEGKGAAGG
HSATHMATAPATRPQPVE
NT seq
3117 nt
NT seq
+upstream
nt +downstream
nt
atgaaaagaatgttaatcaacgcaactcagcaagaagagttgcgtgtcgcccttgtggat
gggcagcgcctgtacgatctggatatcgaaagtcctggacacgaacagaaaaaagcgaac
atttacaaaggcaaaatcacccgcattgaaccaagccttgaagctgcatttgtcgattac
ggtgctgagcgtcacggtttccttcctctcaaagaaatcgcccgcgaatattttcctgca
aactacaactcccatggccgtccgaacattaaagatgttctgcgtgaaggtcaggaagtt
atcgtccagatcgataaagaagagcgtggcaacaaaggtgccgcactgaccacctttatc
agtctggcaggaagctatctggtgttgatgccaaacaacccgcgtgcgggtggcatctct
cgccgtatcgaaggtgatgaccgtacagagctgaaagaagcgctggcaagtcttgagcta
ccagacggcatgggccttatcgtgcgcaccgcaggcgtcggcaaatctgccgaagcattg
cagtgggacctgagcttccgtctgaagcactgggaagccatcaagaaagcggctgaaagc
cgtcctgctccgttcctgatccaccaggaaagcaacgtcattgtgcgtgccttccgtgat
tatctgcgtcaggacatcggtgaaattctgattgataacccgaaagtgcttgagctggct
cgccagcacatcgccgcgctgggtcgcccggatttcaccagcaaaattaaactgtacacc
ggtgaaatcccgctgttcagccactatcagattgaatcccagatcgagtctgccttccag
cgtgaagtgcgtctgccgtccggcggttctatcgttatcgataccaccgaagcgctgacc
gctatcgacatcaactccgcgcgtgcaacccgcggcggcgacatcgaagagaccgccttc
aacaccaacctagaagccgctgatgaaatcgcccgccagctccgcctgcgcgacctgggt
ggtctgattgttatcgacttcatcgacatgaccccggttcgccaccagcgtgcggttgaa
aaccgtctgcgtgaagcggtgcgccaggatcgcgcgcgtatccagattagccatatctcg
cgcttcggcctgctggaaatgtcccgtcagcgtctgagcccgtcactcggcgagtccagc
catcacgtctgcccgcgctgttccgggacaggtaccgtgcgtgacaatgaatcgctctcc
ctctctattctgcgtctgattgaagaagaagcgctgaaagagaacaccaaagaggttcac
gccattgttccggtgccgattgcctcctacctgctgaacgaaaaacgtgcagcggtgagc
gcaatcgaagcgcgacagggcggcgttcgctgcatcatcgtgccaaacgacgagatgcag
accccgcactatcacgtgctgcgcgtgcgtaaaggtgaagagacaagcaccctcagctac
ctgctaccgaagctgcatgaagaagaaatggcgctgccatcggatgaagagcctgccgag
cgtaaactgcctgagcagcctgcattagcaaccttcatcatgccggaagccccgccggaa
gcgacgctggaaaaaccagcggcaaaacctgccgtgcaaaaggcggcccctgccgtgcca
aaagcgcagcctgagcagccgggtctcctgagccgcatcttcggcgcgctgaaaaaaatg
ttcgctggcgaagaagttcagcctgagcagccgaaagaagcgccaaaagaagcgaaacca
gagcgtcagcaggaccgtcgtaagcgtcagaacaatcgtcgcgatcgtaatgaccgcaac
gaccgtagcgatcgtaacgagcgccgtgataatcgttccgagaacaacgaaggtcgtgaa
caacgcgaggacaaccgtcgcaaccgtcgcgagaagcaacagcagaacgttgaagatcgt
gagattcgccagcaggcgggcgatgagtccgagaagagcaaacagcgtgacgagcagcaa
cctcgccgtgagcgtaaccgtcgtcgtaacgacgagaaacgccaggcccagcaggaagtc
aaaaacctgaaccgcgaagcgcctgttgaacagcaggacacggagcaggaagagcgtact
caggttatgccgcgtcgtaagcagcgtcagctgacccagaaagtgcgtgtgggtgctgtt
caggcggaagaaaacgacgttatcgcggttgaagcagcagaaagcacaacgggtacacag
gttgcgaaagttgacctgccagccgtagtagaaaatcaggttgagcaggacgaaagcagc
gaaaaccgtgacaacgcaggtatgccgcgtcgctcccgtcgttctccgcgtcatctgcgc
gtgagcggtcagcgtcgtcgtcgttaccgtgacgagcgttacccaactcagtcgccaatg
ccattgaccgtggcgtgtgcgtcaccagagatggcatccggtaaagtctggatccgttat
ccggttgctcgcccggagcaggctattgaagaacaggctgtgacccaagaggtgattgca
ccggtagcagcggtggaagacgtcgtgactgaagcggcaaccgtggttgaaccgcaggtt
gttgacacggcggcaccgcaggctgtggaagtggaaacgactcatcctgaagtcattgct
gcgccggttgatgccgctccgcagatcattgccgaagaagataccgtggtggctgaagaa
gtcgcggaagacgctgagccagtctccgcagcagaagagaccgcagacgttgccgtcgaa
acggtgactgaagaggttgttcaggacgtcgagattcaggttgaacctgttgtcgaagag
gtcaaagcgcctgaagtgaaatcagagccgattgaggtcgttgcagctgtagcgcctgct
cacgttgctaccgcgccgatgactcgcgccccggcacctgagtatgtacctgaagcgcca
cgccatagcgactgggttcgtccggcattcaacttcgaaggcaaaggtgctgccggtggt
cacagtgcaacgcacatggctactgcgccagctactcgtcctcagcctgttgaataa
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