Exiguobacterium sp. Helios: HNY42_07160
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Entry
HNY42_07160 CDS
T10355
Name
(GenBank) RNA-splicing ligase RtcB
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
exh Exiguobacterium sp. Helios
Brite
KEGG Orthology (KO) [BR:
exh00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
exh03016
]
HNY42_07160
Enzymes [BR:
exh01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
HNY42_07160
Transfer RNA biogenesis [BR:
exh03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
HNY42_07160
Prokaryotic type
tRNA splicing ligases
HNY42_07160
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
SpoIISA_toxin
Motif
Other DBs
NCBI-ProteinID:
QNR20725
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All DBs
Position
1401968..1403158
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AA seq
396 aa
AA seq
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MKTIRGKYGEAKIFTHNVDDMTIEQVTGMLNENIAVDGNVRIMPDCHAGKGSVIGTTMRI
HDKVVPNLVGVDIGCGMLCTQITRNDTAGIDYDKLDATIQELVPSGMSVRNQPHRLSEQI
PFDQVLAPFNETRARLSIGTLGGGNHFIELNTDEENNLYLVIHSGSRNLGKTIAEHYQKL
AESSQFTVDTETIVTSLKEQGREQDIQSTLVELKSQFNETNKDLAYVSGSDMDNYLHDLK
IAQRYAALNRQAMTDVIVEAMGWSVTEQFDTIHNYIDLEQMILRKGAISAQAGEVAIIPM
NMRDGSLIVKGKGNPDWNYSAPHGAGRIMSRSKAFKSVDLKEFEETMQEVWSSSVVESTR
DESPFVYKPMEEIIRNTEDTVELLKVIKPLYNFKAK
NT seq
1191 nt
NT seq
+upstream
nt +downstream
nt
atgaagacgattcgcggaaaatacggtgaagcgaagatttttacccacaacgtcgatgac
atgacgattgagcaggtgacaggcatgctgaatgaaaatattgccgtcgacgggaatgtc
cggattatgcccgattgtcacgccggcaaggggtcggtcattggaacaacgatgcggatt
cacgataaagttgtcccgaatctcgtcggtgtggatatcggttgcgggatgttatgtaca
cagattacacgaaacgacacagccggcatcgactatgacaaactggatgcgacgattcag
gaactggtgccgagtggcatgtcggtccgtaatcagccgcaccgcttgtcggaacagatt
ccatttgatcaagtattggcaccgtttaacgaaacacgcgcccggttatcgatcggcacg
ttaggcggaggaaatcactttatcgagctaaatacggacgaggaaaacaatctgtatctc
gtcattcattccggcagccggaacctcgggaaaacgattgccgagcattatcaaaagctg
gcggaaagctcacaattcactgtcgatacagaaacaatcgtcacatcgctgaaagaacag
ggacgtgaacaagatatccaatcgactttggtcgagttgaagagtcagttcaatgaaaca
aataaagatttggcgtacgtgtccggttccgatatggacaactacctgcatgacttaaaa
atcgcccaacgctacgcggcattgaaccgtcaagcgatgaccgacgtcattgttgaagcg
atgggctggtcggtcacggaacagttcgatacgatccataactacatcgatctcgagcag
atgattctccggaaaggtgcgatttcagcgcaagccggtgaagtcgccatcattccgatg
aacatgcgcgacggttcactgattgtcaaaggaaaaggcaatccggactggaactattcg
gcgccacacggagcaggacgtatcatgtcccgctcaaaagccttcaaatcagtggacttg
aaggaatttgaggagacgatgcaggaggtctggtcgagttcggtcgtcgaatcgacgcgc
gatgagtcaccgtttgtctacaaaccgatggaagaaatcatccgaaacacagaggacacg
gttgagttattaaaagtcatcaagccgctttataattttaaagcgaaatga
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