Exiguobacterium sp. Helios: HNY42_10530
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Entry
HNY42_10530 CDS
T10355
Name
(GenBank) HD domain-containing protein
KO
K03698
3'-5' exoribonuclease [EC:3.1.-.-]
Organism
exh Exiguobacterium sp. Helios
Brite
KEGG Orthology (KO) [BR:
exh00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
exh03019
]
HNY42_10530
Messenger RNA biogenesis [BR:
exh03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
HNY42_10530
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SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
HD
Cas3_HD
TraI_2
HDOD
Motif
Other DBs
NCBI-ProteinID:
QNR21343
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All DBs
Position
complement(2000755..2001945)
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AA seq
396 aa
AA seq
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MIRLFKAIPEHEMPVYSGQDYPLEGTETTSGFLISNHVPGEQVEETLLVASAEIKTSQTG
REWLQFTFNSPSGACKGKQWLNQVTAEEAMRPYLETGIVHVSAKVEEYPADSGNKSLTVQ
RVKAVHDQSGTAFLPQMPAGESARDYRNQLIGLIDEMQAPLRQVAHRVLSTYWEDFSTRP
AALYHHHAYIGGLLKHTACMMTIGFGICQSERPDLTLLQCIQEAEADHKNDLFQAGERDM
RQFAWDDSFDALYQAARSIALLNERPHQDELLLGILLHDIGKIFEYTHLGASDDRFSRLV
QAEPVDEKLSGIALDPNGVLMGHMPYGCFVLEQALQTEAVRLPVDQYHRLIHMILSHHGK
KEWGSSVTPQTTDAWYLHAIDLLDARKEKWRQSQLT
NT seq
1191 nt
NT seq
+upstream
nt +downstream
nt
atgattcgattatttaaagccattccagagcatgagatgccggtttatagcggacaagac
tatccactcgaaggaacggagacgacatcaggctttctgatttccaatcatgttccggga
gaacaggtagaagaaaccctacttgtcgcatcggctgaaattaaaacgagccagacaggt
cgtgaatggttacaatttaccttcaactctccaagtggtgcatgtaaaggaaaacaatgg
ttgaaccaagtgacagcggaagaggcgatgcgtccttatcttgagaccggtatcgtgcat
gtctctgccaaagtcgaagaatatcccgctgattccggcaacaagtcattaaccgtccag
cgggtgaaagccgttcacgatcaatccggtacggcatttttaccgcaaatgcctgccggt
gaatctgcacgtgactatcgtaatcaattaattggtctgatcgacgagatgcaggcgccg
cttcgacaagtggcacaccgtgttttatcgacatattgggaagatttttcgacccgcccg
gcggcattgtatcatcaccatgcctatatcggcggattgttgaaacatacggcttgtatg
atgacgattggttttggaatctgtcaatcggaacgaccggacttgacgctcttacaatgt
attcaagaagccgaagcggatcataaaaacgacttgttccaggcgggtgaacgggatatg
cgtcagtttgcctgggatgacagttttgatgccttgtatcaggctgcacgttcgattgcc
ttgttgaacgaacgtccacaccaggatgaattactgttggggattttgttgcatgatatt
ggaaaaatctttgaatatacccatctcggagcgagcgatgaccgtttttcccgtttggtc
caagcggaaccggtcgatgaaaaactgtccggtattgctttagatccgaacggtgtgtta
atgggacatatgccatatggatgttttgttctggaacaagcgctacaaacagaagctgtc
cgacttccggttgatcagtaccaccggttgatacatatgattttatcgcatcatggcaaa
aaagagtggggatcaagcgtcaccccgcagacgacagacgcctggtatttacatgccatc
gacttactggatgcacgaaaagaaaaatggcggcagtcgcagttaacttaa
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