Exiguobacterium sp. Helios: HNY42_10880
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Entry
HNY42_10880 CDS
T10355
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
exh Exiguobacterium sp. Helios
Pathway
exh03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
exh00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HNY42_10880
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
exh03019
]
HNY42_10880
03400 DNA repair and recombination proteins [BR:
exh03400
]
HNY42_10880
Enzymes [BR:
exh01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
HNY42_10880
Messenger RNA biogenesis [BR:
exh03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
HNY42_10880
DNA repair and recombination proteins [BR:
exh03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
HNY42_10880
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
RecQ_Zn_bind
ResIII
SNF2-rel_dom
HTH_68
AAA_22
Motif
Other DBs
NCBI-ProteinID:
QNR21412
LinkDB
All DBs
Position
complement(2065567..2067000)
Genome browser
AA seq
477 aa
AA seq
DB search
MMEEVLKRIFRYDAFRDGQRPIVESVLDGHDTVAILPTGGGKSICYQLPSYLQTPGLTLI
VSPLLSLIEDQVMQIKRRGERSVAKLTSLESRDQKEHILRHLNQLRYLYLSPEQLAVPQI
QQRLADIKINLFVVDEAHCISQWGHEFRTEYAKLGSIRKQLGNPTCLALTATATNQVEQD
IIQGLALIQPNRIRHSVNRPEIQLIVEQTEQSEKDTVLKRRLKTTNRPCVIYTTTRKEAE
RIATFVPQAAYYHAGLEPEDRQLIQQQFLHDEIDCLVCTSAFGMGVDKGNVRTVIHYTMP
ATIEAYMQEIGRAGRDGQPSTAVLLYAPGDQQLQQFLVDKQYASLLWVDQVTQSRGQGES
FESIEQRLNLEPDDPAYRLLKSQLMEGKTKSQIIEWQEDRKKIRLRELMQMINYIQNTFC
RRAFILEHFGEKPVVQDRCCDNCGTLTVDEPVIQVDVNQLDWKRRLEEVFFSSRPSV
NT seq
1434 nt
NT seq
+upstream
nt +downstream
nt
atgatggaagaagtattaaagcgaatctttcgatatgatgcatttcgtgacgggcaacgt
ccaatcgtcgaatcggtccttgacggtcatgatacagtcgctatcctgccgacaggcgga
ggtaaatcgatttgttaccaattgccatcttatctgcaaacgcccggactgacgttgatt
gtatcccccttgctgtcgctgatcgaagaccaggtcatgcaaatcaaacgccggggggaa
cgatccgtcgccaagttgacgtcgcttgagtcccgtgatcaaaaagagcacattttacgc
cacctgaatcagttacgttatttatatctgtcccctgagcagttggctgtcccgcaaatc
caacaacggttagcggacatcaaaatcaatctgtttgtcgtcgatgaagcccactgtatc
tcgcagtgggggcacgagttcagaacggaatatgcaaaactggggtctatccgaaaacag
ctgggtaatccgacttgcctagctttgacggctacggcaacgaatcaagtcgaacaggac
atcattcaagggctggcacttatacaacccaaccggatccgtcattccgtcaaccgaccg
gaaattcaactcattgtcgaacaaactgaacaaagcgaaaaagatacagtgttgaaaaga
cgattgaagactaccaatcgtccatgcgtcatttatacgacgacgcggaaagaagcagag
cgaatcgcgacgtttgttcctcaggcggcctattaccacgccggtcttgaaccggaagat
cgacaactgattcaacaacagttccttcacgacgaaattgactgtctggtctgtaccagt
gcatttggtatgggtgttgacaaaggaaatgtccggaccgtcattcattatacgatgccg
gctacgattgaagcctacatgcaggaaatcggacgagcgggacgggacggtcagccctcg
actgctgtattactctatgcaccaggtgatcaacaacttcaacaattcttagtggataaa
caatatgcgtcgttactttgggttgatcaagtgactcaatcccgcggacaaggggagtct
tttgaatcgattgaacaacgccttaatctcgaaccggatgatcccgcctatcgattgtta
aaaagtcaacttatggaagggaaaacaaaatcacaaattattgaatggcaagaggaccgg
aaaaaaatacgtttacgtgaacttatgcaaatgataaattatattcaaaatacgttttgt
cgccgggccttcatcttggagcattttggcgagaagccagttgtacaagaccggtgttgt
gacaattgcggtacactcacggtggacgaacctgtcatacaggtcgatgtgaaccaactt
gactggaaacgtcggctagaagaagtctttttttcatcccgtccttcagtgtaa
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