Exiguobacterium sp. Helios: HNY42_12240
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Entry
HNY42_12240 CDS
T10355
Symbol
recJ
Name
(GenBank) single-stranded-DNA-specific exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
exh Exiguobacterium sp. Helios
Pathway
exh03410
Base excision repair
exh03430
Mismatch repair
exh03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
exh00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
HNY42_12240 (recJ)
03430 Mismatch repair
HNY42_12240 (recJ)
03440 Homologous recombination
HNY42_12240 (recJ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
exh03400
]
HNY42_12240 (recJ)
DNA repair and recombination proteins [BR:
exh03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
HNY42_12240 (recJ)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
HNY42_12240 (recJ)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
HNY42_12240 (recJ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ssDNA-exonuc_C
RecJ_OB
DHH
DHHA1
Motif
Other DBs
NCBI-ProteinID:
QNR21673
LinkDB
All DBs
Position
complement(2333251..2335560)
Genome browser
AA seq
769 aa
AA seq
DB search
MYHSKKTWIDKQVDSVKIDELAGQVNVSHQVAHLLVQRGFETADQAKAFLETDQMAFHDP
FLFQDMNKVVARIQQAADEGEMILIYGDYDVDGVSSAAILWHALIEIGAMAECYIPNRFT
EGYGPNEAAFRWAAEEGFGLVITVDCGISGIEEAAVLKELGVDLIITDHHEAKDVLPDAF
AMIHPGVDSNYPYSKLAGAGVAFKVAHALLGRVPEELLDLAVLGTIADLVPLVGENRLLA
AKGIEALNASERPGILALRKVCSLVEDELTEESVGFAFGPRINAAGRLDSAMPALEMLLA
ETIEEASLLAEQLDQQNKQRQDIVKKIAEEATDLVEQHYLADRVLVVDSDQWNPGVVGIV
ASRLVEKYHRPVILLCHDAEKGTAKGSGRSIAAFDLFAELNQSADILPHFGGHPAAAGMT
LSSENVSVLRERLNAQAASLPEEAFIATTEIDLRLNVSDVSIGLIEEMGRLAPFGMGNPS
PRVVVEDASIRDLKRIGRDLTHLKVLVTDGKTELDGIGFGFGDAVDEVSSLAEVSLMGSL
NINEWNGFRKPQLMIQDLAVVDYQLFDYRGGKKPLTDVFELPHDTTTFVAFSEETQTKYA
ERTLNGSAKANVVFLDLPEEESAFLPYLNEAERIYCAFKDEGYYFETIPSREEFKHYFNY
FAKCPRDELRIGLVRLSKSRKWSKRSINFMHSVFSELDFLVTMEDGLPGVNPNAEKRDLT
EAATYKRHEERQRLEQQYIYSSLAQLKERFDTLVEAAKQEEMTWSSNSI
NT seq
2310 nt
NT seq
+upstream
nt +downstream
nt
atgtatcattcaaagaaaacatggatcgataagcaagtcgattccgttaaaatagacgaa
ctggctggccaggtgaacgtttcccatcaagtcgcacacttgctcgtgcaacgtggcttt
gagacagcggatcaagctaaagcgtttttggaaaccgatcaaatggcgtttcatgatccg
ttcttgttccaggacatgaacaaagtagtcgcccggatccagcaagcggctgatgaaggt
gagatgattttgatttacggagactatgatgtcgacggcgtcagttccgctgcgatttta
tggcatgcgttgattgaaatcggtgcgatggcggaatgctacattccgaatcggtttaca
gaaggttacggaccaaacgaggcagcgttccgctgggcggcagaagaaggattcggtctc
gtcatcacggtcgactgcggaatttccggtatcgaggaagccgccgtcttaaaagaactc
ggcgttgatttaatcattaccgatcaccatgaagcaaaagacgtcttgccggacgctttc
gccatgattcatccgggtgttgattccaattacccgtattcgaagcttgccggtgccggt
gttgcctttaaggtcgcccatgcgttactgggacgtgtgccggaagaattgcttgatttg
gctgtactcggaacgattgccgacttagtgccgctcgtcggtgaaaaccggttgcttgca
gcgaaagggattgaagcgttaaatgccagtgaacgaccgggtattttagcgttacggaaa
gtctgcagtctcgtcgaagacgagttgacggaagagtcggtcgggtttgcctttggtccc
cggatcaatgcagccggtcgactcgactcggcgatgccggcgcttgagatgttactcgcg
gaaacaatagaagaagccagcctgcttgcagaacaactcgaccaacaaaataaacaacgg
caggatatcgtcaaaaagattgccgaagaagcgaccgacctcgtggaacagcattatctg
gcagaccgtgtcttagtcgtcgattcggatcaatggaatccgggtgtcgtcggaatcgta
gcgtcccggcttgttgaaaagtatcatcgacctgtgattcttttgtgtcatgatgcagaa
aaagggacggcaaaaggttctggccgttcgattgccgcatttgatctctttgccgagttg
aatcagtcggctgatatactaccgcacttcggaggacatccggctgctgccggaatgaca
ttgtcatcagaaaacgtcagtgttttacgggaacgattgaatgcccaagcggcaagtttg
ccggaagaagcgttcatcgcgacgacagaaattgatttacgcctgaatgtttcggatgtc
tccatcggcttgattgaagagatgggacgactcgcaccgttcggtatggggaatccgtca
ccgcgtgtcgtcgtggaagatgccagcatccgagacttaaaacggattggccgtgatttg
acccacctgaaggttctcgtgaccgacggaaagaccgaactggatggaatcggattcggt
tttggtgacgccgtcgacgaagtgtcatcactcgcagaagtgtcgttaatggggagtctg
aatatcaatgaatggaacggtttccgtaaaccgcaactgatgattcaggatttagcagtc
gtcgattaccaactgtttgattaccgtggtggcaagaaaccgttgacggatgtgtttgaa
cttccgcatgatacgacgacgtttgtcgccttctcggaagaaacacaaaccaaatatgcc
gagcgtacgctaaatggatctgctaaggcaaacgtcgtctttttggatctgccggaagaa
gaatcggccttcttgccttatttgaacgaagccgaacggatttactgtgcgtttaaagac
gaaggatactatttcgagacgattccatcccgggaagaatttaagcattactttaattac
tttgcgaaatgcccccgtgatgagctccgaattggacttgttcgtttgtcgaaatcgcga
aaatggtcgaaacgttcgattaactttatgcattcagtgttttcggaacttgattttctt
gttacaatggaggacgggctgccgggtgtgaacccgaacgctgaaaaacgagacttgacg
gaagctgcgacgtacaagcgtcatgaggaacgtcaacgtcttgagcaacaatacatttat
tcgtcactcgctcagttgaaagagcgttttgatactttggtagaagcggcgaagcaggag
gaaatgacatggagttcaaacagcatataa
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