Exiguobacterium sp. Helios: HNY42_15305
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Entry
HNY42_15305 CDS
T10355
Symbol
rho
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
exh Exiguobacterium sp. Helios
Pathway
exh03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
exh00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HNY42_15305 (rho)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
exh03021
]
HNY42_15305 (rho)
03019 Messenger RNA biogenesis [BR:
exh03019
]
HNY42_15305 (rho)
Transcription machinery [BR:
exh03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
HNY42_15305 (rho)
Messenger RNA biogenesis [BR:
exh03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
HNY42_15305 (rho)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
OB_RNB
AAA
Ribosomal_L11
S1CSD-TOTE-2
ATPase_2
AAA_22
Mor
Spore_III_AA
Motif
Other DBs
NCBI-ProteinID:
QNR22256
LinkDB
All DBs
Position
complement(2970196..2971560)
Genome browser
AA seq
454 aa
AA seq
DB search
MPTEKTDKPERSYTLAQLSNLTLKDLYEIAKTKNVPQYREARKRELMFKILKAQAESTGL
YFLEGVLEVIPGNPQMQNDGGFGFLRPINYSQSSEDIYIAASQIRRFNLRNGDVVTGKVR
PPKENERFQGLLSVEAVNGEAPDTARNRLFFPALTPIYPDRLMRLETEPRHLSVRVMDMI
APVGFGQRGLIVAPPKAGKTSLLKEIANSIQVNHPDVELIILLIDERPEEVTDIERSVPG
ADVVSSTFDETPDNHVRISELVLERAMRLVEHKKDVVILMDSITRLTRAYNLTVPQSGRT
LSGGIDPAAFHKPKRFFGAARNIEHGGSLTILATALVETGSRMDDVIYEEFKGTGNMELH
LDRKLSERRIFPAIDIRKSGTRKEELLLPQDQLDALWTIRRTMNESNEFVDSFLRKIRDT
KNNEEFFVELEKEKKKPVRRAPVKPRVTKTDTTT
NT seq
1365 nt
NT seq
+upstream
nt +downstream
nt
atgccaactgaaaaaactgacaaaccagaacgttcctatacactcgctcaactcagcaac
ctgacattaaaagatttatatgagattgcaaaaacaaaaaacgtaccacagtaccgagag
gcgcgtaagcgtgaattgatgttcaagattcttaaagcacaagcagagtccaccggtctt
tatttcctcgaaggggtactcgaagttatccccggaaacccacaaatgcaaaatgatggc
ggcttcggcttccttcgtcctatcaactattcgcaatcctctgaagatatctacatcgcc
gcctcacaaatccgccgctttaatctccgtaacggagacgtcgtgactggaaaagtccgg
ccgccaaaagaaaatgaacggttccaaggtcttttaagtgtggaagccgtcaatggagaa
gcaccggatacggcgcgcaatcgtctgttcttcccggcattgacaccgatctatccagat
cgtctgatgcgtcttgagacagaaccgcgtcatttgtcggtccgggtgatggatatgatt
gccccggttggatttggccaacgcggtttgattgtcgcgccgccaaaagcaggtaagact
tctctattaaaagaaatcgccaattcgatccaggtgaatcatccggatgttgaattgatt
attctgttgattgacgaacggccggaagaagtgacggatatcgaacgttctgtccccgga
gcggatgtcgtcagttcaacgtttgacgaaacaccggacaaccacgtccggatttcggaa
ctcgttttggagcgagcgatgcgcctcgtcgaacataaaaaagatgtcgttattttaatg
gactcgattacacggttgacgcgggcttataacttaactgttccgcaaagcggtcggacg
ttgtccggggggattgacccggcagccttccacaaaccgaaacgctttttcggtgccgcc
cggaatatcgaacacggtggtagtctgacgattcttgcgacggcactcgtcgaaaccggt
tcccggatggatgatgtcatctatgaagagtttaaaggaaccggcaatatggaactgcat
ctggaccggaaattatccgagcgccggatcttcccggccatcgatatccggaaatccgga
acacggaaagaagagttgttgttaccgcaagatcagctcgatgccttgtggacgatccgc
cggacgatgaacgagtccaatgagtttgtcgacagtttcttacgcaagattcgggacacg
aaaaataacgaagaattttttgtcgaactggagaaagaaaagaagaaacccgtacggcgc
gcacctgtgaagccacgtgtgacgaaaaccgacacaacgacttga
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