Exiguobacterium sp. N4-1P: A0126_00250
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Entry
A0126_00250 CDS
T10338
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
exi Exiguobacterium sp. N4-1P
Pathway
exi03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
exi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
A0126_00250 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
exi03400
]
A0126_00250 (mfd)
Enzymes [BR:
exi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
A0126_00250 (mfd)
DNA repair and recombination proteins [BR:
exi03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
A0126_00250 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
UvrB_inter
TRCF
CarD_TRCF_RID
Helicase_C
ResIII
Cas3-like_C_2
UB2H
MFD_D3
RecG_dom3_C
AAA_22
KGK
Motif
Other DBs
NCBI-ProteinID:
ASI34080
UniProt:
A0A248L474
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All DBs
Position
39712..43230
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AA seq
1172 aa
AA seq
DB search
MKQLQNLLLGIPEIKTVRERFRQGVDAQLITGLMNSGKALFVAGIYQETKKRFVIVTHNM
FQAQKLYDDLIELVPEQEVMLYPVDETLAAELSYGASPELRATRIETRHRLLTTDDGILI
IPLVGLRRYAPPASDFLAHTKRIKPGDILAIPDFIQELVDAGYERTATVTTPGEFSVRGS
IIDIYPLTVDRPYRLDLFDEEVDSIYTFDAETQRSLGVVAEALLPPAAEHFATTENLRAA
GERLRALYEATKERVQSTEVLAALEEGIAYDVELLESGERPKQLAKYAPLLYQKTLLADI
TDAVLIVDEIARIEEAAEVQDAEEAEWMASLIERGQSVSDYILSVPMLKVFEQRQLLYLS
LLPTRRSGVPESAAIHFNIKPIAPFHGQMERLKQEIDRYARADMWMVFLASNKERAERMR
QTLSDYGVEASLHTAEEDMRRGHPSILIGGIHGGFEMTNARLVVVTEEEVFKQPTRRRKQ
TTKLTNAERIKSYQELKTGDYIVHIHHGIGRYHGIKTIDVAGNHKDYLHLVYAGDDSLYV
PVDQIDLIQKYVGAEGKEPKIYKLGGTDWKKVKAKVQKSVEDIADELIKLYATREAAVGF
AFPEDDDSMQAFEASFPYEETVDQVRSIEEIKKDMERPRPMDRLLCGDVGYGKTEVAIRA
AFKAVMAGKQVALLVPTTVLAQQHYETMLERFSEWPINVSVMSRFRSASELKATKKGLKE
GTIDVVVGTHRVLSKDVQFADIGLLIIDEEQRFGVKHKERLKQLKTNVDVLTLTATPIPR
TLHMSMIGIRDLSVLETPPENRYPVQTYVMEYDGIIMREALERELGRGGQAFFLYNRVEG
IERKAEEIRALVPEARVVTAHGRMTETELESQLIAFFEGDADVLVSTTIIETGIDIPNVN
TLIVNDADQMGLSQLYQLRGRVGRSSRVAYSYFTYRPQKRLTEVAESRLQAIKEFTELGS
GFKIAMRDLSIRGAGNLLGSQQSGFIDSVGFDLYSQMLSEAVEERKERMKGKQRVQKFVP
DFTFSLDAYIPSHYMSDSELKIEFYKRLKYVDTTESLDALEGEMLERFGEFPNEVARLIQ
LTRMRIFAERARIERVKQTDPKIEIVLSEQTTQTLDVADFVKWTVPIGRGLGMGQQEGKL
VLTLNRGKQTVQQTTEQAERLLAELDRRISMR
NT seq
3519 nt
NT seq
+upstream
nt +downstream
nt
atgaaacaactacaaaatctgttgctcggaataccagaaataaaaacggtccgtgagcgt
tttcgacaaggggtcgatgcccaactcatcacaggcttgatgaatagcgggaaagcgttg
ttcgtcgcaggcatttatcaagaaacaaaaaaaaggttcgtcatcgtcacccacaatatg
tttcaagcgcaaaaactgtatgatgatttgattgaactggtgcctgaacaggaagtgatg
ctctacccggtcgacgagacattagctgctgaattatcgtacggggcgagcccggaatta
cgggcgacacggattgaaacgcggcaccggctcctgacgaccgatgatggtattttaatc
atcccactcgtcggtctcagacggtatgctccacctgcaagtgatttcttagcacatacg
aaacggattaagccgggcgatatcttggcaattccggacttcattcaagaattagtcgac
gccggatatgagcgaacggcgaccgtgacaacaccgggagaattttcagttcgcgggagt
atcatcgatatttatccgttgacggtcgaccgtccctatcgattggatttatttgatgaa
gaagtcgactcgatttatacattcgatgcagaaacgcaacgatcactcggtgtggtcgca
gaagcgttgcttccaccggcagctgaacactttgcgacgacggaaaatctccgtgccgcg
ggtgaacggttgcgtgcactctatgaagcgacgaaagaacgtgtccaaagtacggaagtc
cttgcagcacttgaagaagggatcgcctatgacgtcgaattgctcgaaagtggggagcga
ccgaaacaactcgcgaaatacgcgccgttactgtatcagaagacattactggctgatatc
acagatgccgtcttgatcgtcgatgaaatcgcacggatcgaagaagcggcggaagttcag
gatgcggaagaagcggaatggatggcttcgttgattgaacgggggcaaagcgttagtgat
tacattctctcggttccgatgctcaaagtcttcgaacaacgtcagctactctacttgtcg
ctccttccgacacgcagaagcggcgtccctgaaagtgcagcgattcacttcaacatcaaa
ccgatcgctccgtttcatggccaaatggaacgtctgaaacaggaaatcgatcggtatgcc
cgggcagacatgtggatggtctttcttgcgagtaacaaagagcgggcggagcggatgcgg
cagacactttccgactacggtgtcgaagcgtccttgcatacggcagaagaagatatgcgt
cggggacatccgtcgattttaatcggtggcattcatggtggtttcgaaatgacgaatgca
cgactcgtcgtcgtgacggaagaagaagtctttaagcaaccgacccgtcgccggaaacag
actacgaaattgacgaacgcggaacggatcaaaagttaccaagagttgaagacgggtgat
tatatcgtccatatccaccatggaattggtcgttaccacggcatcaaaacgattgatgtc
gcagggaaccataaagattacttgcaccttgtctatgccggtgacgactccttgtatgtt
ccggttgaccaaatcgacttgattcaaaaatacgtcggggcagaaggaaaagaaccgaaa
atctataaactcggcggaacggactggaagaaagtcaaagcgaaagtccaaaaatcagtt
gaggacatcgcagatgaactaatcaaattgtatgcgacacgagaagcggcagttggattt
gctttcccggaagatgatgacagcatgcaggcattcgaagcctcgttcccgtacgaggaa
acggtcgatcaagtccggtcgattgaagagattaagaaagatatggaacggccgcgtccg
atggatcgtctgttatgtggagacgtcggatacgggaaaacggaagtcgcgattcgggcg
gcatttaaagcagttatggcagggaaacaagtcgctctccttgtaccgacgactgttctt
gcccaacaacactatgaaacgatgctcgagcgattcagcgaatggccaatcaatgtttca
gtcatgagtcggttccgatcggcgtcagaactgaaagcaacaaaaaaaggcttgaaagaa
ggaacgatcgacgtcgttgtcggaacacaccgtgtcttatcaaaagatgttcagttcgct
gacattggtctgttgatcatcgatgaagagcaacgcttcggtgttaaacataaagaacga
ttgaaacaactcaaaacgaatgtcgatgtcttgacgttgacggcgacaccgattccacgg
accttacacatgtcgatgatcgggattcgtgatttgtcggtcctcgagacaccgcctgaa
aaccgctatcctgtccaaacgtacgtgatggagtacgacggaatcatcatgcgtgaagca
cttgaacgtgaacttggtcgaggggggcaagcctttttcctctacaatcgcgttgaaggg
attgaacggaaggcggaggaaatccgggcgctcgttccggaagcacgtgtcgtcacggca
catggtcggatgacggagacggaacttgaaagtcaattgattgccttcttcgagggggat
gccgatgttcttgtcagtacgacaatcattgaaacggggatcgatattccgaacgtcaat
acattgatcgtcaatgatgccgatcaaatgggtctatcacagctctaccaactgcgtggt
cgtgtcggacgttcaagtcgtgtcgcgtattcctactttacgtaccgtccgcaaaaacgg
ttgaccgaagtcgccgagagtcgtcttcaggcgatcaaggaatttacggagcttggaagt
ggcttcaagattgccatgcgtgacttgtcgattcgcggtgccgggaatctgctcggatcc
caacaatccggttttatcgattcagtcgggttcgatttgtattcacaaatgttatcggaa
gccgtcgaagaacggaaggaacggatgaaagggaaacaacgtgtccaaaaattcgtacca
gactttacgttcagtctcgatgcgtatattccgagtcattatatgtcggattctgaactg
aaaattgagttctataaacgcttgaagtatgttgatacgacagaaagtcttgatgcactc
gaaggagagatgctggagcgcttcggtgaattcccgaatgaagtcgcacgattgattcag
ttgacgcggatgcggatttttgctgaacgggctcggattgagcgggtcaaacaaacggac
ccgaaaatcgagatcgtcttatccgaacaaacgactcagacgctcgatgttgcggatttc
gtcaagtggacggtaccgattggtcgcggactcggcatgggacaacaagaaggaaaactt
gttttgacgttgaaccgtggcaaacaaaccgttcaacaaacaacggaacaagcagagcgg
ttgctcgctgaacttgaccgccggatctcgatgcgatga
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integrated database retrieval system
