Exiguobacterium sp. N4-1P: A0126_05650
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Entry
A0126_05650 CDS
T10338
Name
(GenBank) RNA-splicing ligase RtcB
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
exi Exiguobacterium sp. N4-1P
Brite
KEGG Orthology (KO) [BR:
exi00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
exi03016
]
A0126_05650
Enzymes [BR:
exi01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
A0126_05650
Transfer RNA biogenesis [BR:
exi03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
A0126_05650
Prokaryotic type
tRNA splicing ligases
A0126_05650
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
ASI35071
LinkDB
All DBs
Position
1114405..1115595
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AA seq
396 aa
AA seq
DB search
MKTIRGKYGEAKIFTHNVDDTTIEQVTGILNENIAVDGNVRIMPDCHAGKGSVIGTTMRI
HDKVVPNLVGVDIGCGMLCTQINREGTAGVDYEKLDAAIQALVPSGMSVRNQPHRLSEQI
PFEQVLAPFNETRARLSIGTLGGGNHFIELNADDEDNLYLVIHSGSRNLGKTIAEHYQKL
AESSQFTVDTASVVASLKDQGREQDIQSTLVELKSQFNETNKDLAYVSGSDMDNYLHDLK
IAQTYAALNRQAMTEVILEAMGWSATDQFDTIHNYIDLERMILRKGAISAQAGEVAIIPM
NMRDGSLIVKGKGNPDWNYSAPHGAGRIMSRSKAFKSVDLREFEATMQDVWSSSVVESTR
DESPFVYKPMEEIIRNTEDTVELLKVIKPLYNFKAK
NT seq
1191 nt
NT seq
+upstream
nt +downstream
nt
atgaagacgattcgcggaaagtacggcgaagcgaagatttttacacacaatgtcgatgac
acgacgattgaacaggtgacggggattctgaacgaaaacattgctgtcgacggcaatgtc
cgaatcatgcccgattgtcacgccggcaaaggctcggtcatcggaacgacgatgcggatt
cacgataaggtggttccgaatctcgtcggtgtcgatattggctgcggcatgttatgtaca
caaatcaaccgtgaaggaacagccggcgtcgattatgagaagttggatgctgcgattcag
gcactggttccgagcggcatgtcggttcgcaatcagccgcaccggttgtcggaacagatt
ccgtttgagcaggtgttggcaccgtttaacgaaacacgggcccggttatcaatcggcacg
ttaggcggcgggaatcactttatcgagctgaacgcggacgacgaggacaatctctatctc
gtgattcattccggcagccggaacctcgggaaaacgattgccgagcattatcaaaagctg
gcggaaagctcacaattcaccgtcgatacggcgtcggtcgtcgcctcactgaaagatcag
ggacgggagcaggacatccaatcgacgttggtcgagctgaagagtcagttcaatgaaacg
aataaagatttagcgtacgtgtccggttccgatatggacaattacctgcatgacttgaaa
atcgctcaaacgtacgcggcactgaaccgtcaagcgatgacggaggtcatcctggaagcg
atgggctggtcagcgaccgatcaattcgatacgatccataactacatcgatctcgagcgg
atgattctccggaaaggtgcgatttccgcacaggcgggtgaagtcgccatcattccgatg
aacatgcgtgacggttcactgattgtcaaaggaaaaggtaatccggactggaactattcg
gcgccacacggagcaggacggatcatgtcccgttcgaaagcctttaaatccgttgatctg
agagaatttgaagcgacgatgcaggacgtctggtcgagttcggtcgtcgaatcgacgcgt
gatgagtcaccattcgtctataaaccgatggaggaaatcatccggaacacagaagatacg
gtcgaattactcaaagtcatcaagccgctctataactttaaggcgaagtga
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