Exiguobacterium sp. MH3: U719_12205
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Entry
U719_12205 CDS
T02903
Name
(GenBank) 5-hydroxymethyluracil DNA glycosylase
KO
K10563
formamidopyrimidine-DNA glycosylase [EC:
3.2.2.23
4.2.99.18
]
Organism
exm
Exiguobacterium sp. MH3
Pathway
exm03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
exm00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
U719_12205
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
exm03400
]
U719_12205
Enzymes [BR:
exm01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.23 DNA-formamidopyrimidine glycosylase
U719_12205
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
U719_12205
DNA repair and recombination proteins [BR:
exm03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
U719_12205
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Fapy_DNA_glyco
H2TH
zf-FPG_IleRS
Zn_ribbon_6
Zn_ribbon_TFIIB
Zn_ribbon_IS1595
NFACT_N
DZR
Auto_anti-p27
DUF7573
RNHCP
Motif
Other DBs
NCBI-GeneID:
17606768
NCBI-ProteinID:
AHA30414
LinkDB
All DBs
Position
complement(2257412..2258242)
Genome browser
AA seq
276 aa
AA seq
DB search
MPELPEVETVRRSLERSVSGKTVSSVKVYHPKMIRGMEVAPFADALHQERIERVERRGKF
LLFDFDRFYLVSHLRMEGKYFPYPQPVERDKHTHVVFRFTDGSELHYNDVRKFGTMELRD
KETAMQTAPLAQLEREPFDPEFTAEVLAENLIRKKRSPIKTALLDQSIFLGLGNIYVDET
LHAARVHPLTKAGALTLDDISRIHQAGVDVLRKAVEAGGSTIRSYVSPSGKGEFQLQLAV
YGQKGEPCPRCGTAIEKIKVGGRGTHFCPTCQQVAL
NT seq
831 nt
NT seq
+upstream
nt +downstream
nt
gtgcctgaattacctgaagtcgagaccgttcgtcgcagtttagaacgttcggtctctgga
aaaacagtctcttccgtcaaagtctaccacccgaaaatgattcgggggatggaagtggca
ccatttgcagatgccttacatcaagaacggatcgaacgcgtcgaacgtcgcggtaagttc
ctactctttgattttgatcgtttttatctcgtcagccatttgcggatggaagggaagtac
ttcccgtatccgcaaccggtcgagcgggataaacatactcatgtcgtcttccgtttcacg
gatggttcggagctgcattacaatgacgtccggaagttcggaacgatggaattacgtgat
aaggaaacagcgatgcaaactgctccactggcacagctggagcgtgaaccatttgatcca
gagttcacagcagaagtgttagcggagaatttaattcgtaaaaaaagaagtccaatcaaa
acggcattgctcgaccaatcgatcttccttggtctcggtaacatctatgtcgatgagacc
cttcatgcggcacgtgtccatccgttgacgaaggctggtgccttgacgcttgatgatatt
tcacgcatccatcaagccggtgtcgacgtcttacgaaaagcggtagaagcagggggaagt
acgatccgaagttatgtctcaccttccggaaaaggtgagttccagcttcaactcgcggta
tacggtcaaaagggcgaaccatgtccccgttgcggcactgccattgaaaaaatcaaagtc
ggtggacgaggaacgcacttctgtccgacgtgccaacaggtcgccttatga
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