Exiguobacterium sp. U13-1: ESP131_01590
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Entry
ESP131_01590 CDS
T04561
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
exu
Exiguobacterium sp. U13-1
Pathway
exu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
exu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
ESP131_01590
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
exu03019
]
ESP131_01590
03009 Ribosome biogenesis [BR:
exu03009
]
ESP131_01590
Enzymes [BR:
exu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
ESP131_01590
Messenger RNA biogenesis [BR:
exu03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
ESP131_01590
Ribosome biogenesis [BR:
exu03009
]
Prokaryotic type
rRNA helicases
ESP131_01590
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
CMS1
CdAMP_rec
Motif
Other DBs
NCBI-ProteinID:
AOS99060
LinkDB
All DBs
Position
complement(299370..300602)
Genome browser
AA seq
410 aa
AA seq
DB search
MSTFETLHISDLWIKKLQKQGIKEPTPIQEQAIPSLLEGRDLIGQAQTGTGKTLAFLLPI
LEQIDVESQTVQALIVAPTRELARQIADETHKLIRNTEQYRALAVYGGQDVFKQIQRLGR
MPQIIIGTPGRILDHVGRGTLDLSELRTLVLDEADQMLQIGFLPEIEDIIEAAPVDRQFV
MLSATMPPKVEELAKTYLRNPVEVQVEAESITVEAIEQFVVETTDRRKQATLRTMLDEMR
PYAAIIFCRTQRRVSKLNEEMQMQGYPTDELHGGLTQGKREKAMAKFYQGKTQFLIATDV
ASRGLDVTGVTHVFNYDLPDDAESYVHRIGRTGRAGNDGIAVSIVTPKDGRTFRDMEREL
NISVTPIVVELSEEAIRAQHDQSKGTRKVTEGRGNTRRSNNRRPGRAHRK
NT seq
1233 nt
NT seq
+upstream
nt +downstream
nt
atgtcaacatttgaaacattacacatcagtgacctgtggataaaaaaattacaaaaacaa
ggcatcaaggagccgacaccgattcaagaacaagcgattccgtcattactcgaaggacgc
gacttgattggacaggcgcaaacgggaacagggaagacgttggcgtttctcttacccatc
cttgagcaaattgatgtcgaatcacaaacggttcaagcattgatcgtcgcaccgacacgt
gaacttgcgcgtcaaattgccgacgagacgcataaactgattcggaatacagagcagtat
cgtgcgcttgctgtatacggcggacaagacgtctttaaacagattcaacgtctcggtcgg
atgccacaaattatcatcggaacgccaggacggatactcgatcatgtcggtcgtggcaca
cttgatttaagtgaattacggacgcttgttttggatgaagcagatcaaatgctgcaaatc
ggtttcttgccagaaatcgaagacatcatcgaggcggcaccggttgatcgtcaattcgtc
atgttatctgcaacgatgccaccgaaagtagaggaactggcgaaaacgtatttgcgtaac
ccggtcgaagtgcaagtagaagcggaaagcatcaccgtagaagcgatcgagcagttcgtc
gttgagacgacggatcgccgcaaacaagcgacactgcggacgatgcttgacgagatgcgt
ccgtacgcagccatcattttctgccgtacacaacgtcgcgttagtaaattgaacgaagaa
atgcagatgcaagggtatccgacggatgaattgcacggtggactaacgcaagggaaacgg
gaaaaagcgatggcgaagttctatcaaggaaaaacacaattcctgatcgcaacagatgtc
gcttcgcgtggacttgatgtgacaggtgtgacacacgtctttaactatgatttaccagat
gatgcggaaagttacgttcaccggattggtcggacaggacgtgctgggaacgacgggatt
gccgtttcgatcgtgacaccaaaagatggtcggacgttccgtgatatggagcgggaattg
aacatctcggtcacaccaatcgtcgtcgaattgtctgaagaagcgattcgcgcacagcac
gaccaaagcaaaggaactcgaaaagtgacggaaggacgtggaaacacacgtcgttcgaac
aaccgtcgcccaggacgtgcacatcgtaagtaa
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