Exiguobacterium sp. U13-1: ESP131_12410
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Entry
ESP131_12410 CDS
T04561
Name
(GenBank) recombinase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
exu
Exiguobacterium sp. U13-1
Pathway
exu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
exu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
ESP131_12410
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
exu03019
]
ESP131_12410
03400 DNA repair and recombination proteins [BR:
exu03400
]
ESP131_12410
Enzymes [BR:
exu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
ESP131_12410
Messenger RNA biogenesis [BR:
exu03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
ESP131_12410
DNA repair and recombination proteins [BR:
exu03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
ESP131_12410
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
RecQ_Zn_bind
ResIII
TniB
NACHT
Motif
Other DBs
NCBI-ProteinID:
AOT01020
LinkDB
All DBs
Position
complement(2370341..2371771)
Genome browser
AA seq
476 aa
AA seq
DB search
MEALLHRHFGYEAFRPGQRQIIDSILDGTDTLAILPTGGGKSVCYQFPSYVQNEGLTLIL
SPLLSLIEDQVMQIKRRGERSVAKLTSVETREEKEQILSVLEHLRYLYLSPEQLALPQIR
ARLKQVNIALFVVDEAHCISQWGHEFRPEYARLGHIRQELGLPPCLALTATATRAVEQDI
RTQLRMREPQIIRRSVNRPEIQYVVDRVDREEKDAAVDRWMERIVRPCVIYTTTRKEAER
IAGIIDGATYYHAGLTIEDRQLVQQQFLHDEIDCLVCTSAFGMGVDKGNVRTVIHYTMPA
TIEAYMQEVGRAGRDGKEATAILLYAAQDEQLQTYLIDTQYAPVLWIDQLQQGMNQGESY
AKMESRFRFNPEDPAYRLLKSQLENGWSKERIIQWQTERKQLKRQEINQMMDYVHRNECR
RSMLLHHFDEQVIVQPRCCDICGTIEWENPVQRRTHQPVDWKLRLEQVFFSSPDSV
NT seq
1431 nt
NT seq
+upstream
nt +downstream
nt
atggaagcgttattgcatcgtcattttggatacgaagcatttcgacctggacaacgccaa
atcatcgattccatcctagacggaacagatacattagcgattttgccgacaggcggagga
aaatctgtctgttatcaatttccgtcttatgtacaaaatgaaggactgacgttgattttg
tctccgttactctcgttgattgaagatcaggtcatgcaaatcaagcgcagaggagagcga
tctgtcgctaaattaacatcagtcgagacacgagaagagaaggagcagatcttatctgta
ctcgaacatctacgatatctttacttatcgccggaacaactcgcgctaccacagattcgg
gctcggctaaaacaggtcaatattgctctcttcgtcgttgatgaggcgcattgtatctcc
caatggggacacgaatttcgaccggagtacgcaagacttggtcacattcgacaagaacta
ggccttccaccatgtctcgccttaacggcaacagcgacgcgtgctgttgagcaagatatt
cgaacacaactgcgtatgcgcgaaccacaaatcatccgtcgttctgtcaaccgaccagaa
atccaatatgttgtcgatcgcgttgatcgagaagaaaaagatgcggcagttgatcggtgg
atggaacgcatcgttcgcccatgcgtcatctatacgacaacccgtaaagaagcggaacga
attgctggaatcattgacggcgcgacctattatcatgctgggttgacgatagaagatcgc
cagcttgtccaacaacagtttcttcatgatgagattgattgtctcgtgtgtacgagtgcg
ttcggaatgggtgtcgataaaggcaacgtgcgtacggtcattcattatacgatgcctgcg
acgatcgaagcctatatgcaggaagtcggacgtgccggacgtgacggtaaagaggcgacc
gcaatcttactctacgctgctcaagatgaacaattacagacgtacttgatcgacacgcaa
tatgcacccgtcttgtggatcgatcaattgcaacaagggatgaatcaaggcgaatcctat
gccaagatggaaagtcgttttcgttttaacccggaagacccggcataccggttactcaaa
tcacaactcgaaaatgggtggtcgaaggaacgcatcatccagtggcaaacggaacgtaaa
caattaaaacgacaagagatcaaccagatgatggactacgttcaccggaacgaatgtcgc
cgttcgatgttgttgcatcattttgatgagcaggtaatcgtacaaccacgttgttgtgat
atatgtggaacgattgagtgggaaaatccagtgcagagaaggacgcatcaaccggtagat
tggaaattgcgtttagaacaagtctttttttcatcaccagattcggtgtaa
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