Exiguobacterium sp. U13-1: ESP131_12540
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Entry
ESP131_12540 CDS
T04561
Symbol
polC
Name
(GenBank) PolC-type DNA polymerase III
KO
K03763
DNA polymerase III subunit alpha, Gram-positive type [EC:
2.7.7.7
]
Organism
exu
Exiguobacterium sp. U13-1
Pathway
exu03030
DNA replication
exu03430
Mismatch repair
exu03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
exu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
ESP131_12540 (polC)
03430 Mismatch repair
ESP131_12540 (polC)
03440 Homologous recombination
ESP131_12540 (polC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
exu03032
]
ESP131_12540 (polC)
03400 DNA repair and recombination proteins [BR:
exu03400
]
ESP131_12540 (polC)
Enzymes [BR:
exu01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
ESP131_12540 (polC)
DNA replication proteins [BR:
exu03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
ESP131_12540 (polC)
DNA repair and recombination proteins [BR:
exu03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
ESP131_12540 (polC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
RNase_T
DNA_pol3_finger
PHP
DNA_pol3_a_NI
DNA_pol3_a_NII
HHH_6
tRNA_anti-codon
DEDDh_C
HHH_3
RNase_H_2
T2SSK
Auto_anti-p27
Motif
Other DBs
NCBI-ProteinID:
AOT01919
LinkDB
All DBs
Position
complement(2398810..2403099)
Genome browser
AA seq
1429 aa
AA seq
DB search
MDTQQRMSLLLSDLELPNGIIEEYFNEAVLEKLRVNKAKATWTFEIRLPHVLPQNVYQLF
TSRLVSRYQQFAEVKIILHADSRPDERLYHDYWPYVVQDLADVSSAMRTQLGRVLPEFKE
QKLFIPVRSEPEAGFLKSSLCGELQLLYSAYGFPKFNCEPIVQINESKQEALRNQVKQED
MEEAKRMLELQFKREQSRDDDEGPVEIRIGKPIQDEIVPIKTIQDEERRIAIRGLVFSAE
SRELRSGKTIFTFKMTDYTDSLVVKMFARDETDVKILSAIKKGMWIQAAGRVEFDTFLRD
LCMMIAQLSEVKMEAPADPWAGEKRVELHAHSQMSQMDAVMNVTKYVERAAKWGHPAVAI
TDHAGAQSFPDAYYAGKKNDIKVLYGIEANVVDDGVQVAYHPVERNLDDATFVVFDVETT
GLSAMYNKIIELAAVKIHDGDIIDKFEAFADPKHLLSATTIDLTGITDDMVRGKPDPEQV
VKEFMDWVGDSILVAHNASFDIGFLNATLRSGGHDESVLPVIDTLELARVLMPTLKNHRL
NTLAKRFDIELTQHHRAIYDAEATGYLMVKLLQMADEMFDMKTHASLNREMGKDISRARP
YHATVYAKNRTGLKNLYQLISIAHTKHVHRVVRTPRSQLVAHRDGLIIGSACDNGEVFDA
ALNKSDEDLAKVMQFYDFIEIQPPAMYGHLIEREIVQNELELRELIKKIIRVAEEHDILP
VATGNVHYLDQHDATYREILIRTQGGANMLNMRKQLPPAHFRTTKEMMDDFKFLGPDVSE
RLVITNSQAVAEQFENIDIIPKDLYTPKIEGADEEVRNLSYDMAHRIYGETLPEIVEARL
EKELKSIIGHGFAVIYLISHKLVKKSLDDGYLVGSRGSVGSSLVATMTEITEVNPLPPHY
VCPNCKESEFFDDGSVGSGFDLPDKSCSKCDIPLFKDGHDIPFETFLGFKGDKVPDIDLN
FSGEYQPQAHAYTKVLFGDDYVYRAGTIGTIAEKTAYGYVKGYQSENELTYRNAEVDRLV
SGVTGVKRTTGQHPGGIIVVPDYMDIYDISPIQYPADDMGSEWKTTHFDFHSIHDNLLKL
DILGHDDPTMIRMLQDLSGRDPKTIPVDDPEVMKIFSSTESIGVTPEQIDSKTGTLGIPE
FGTKFVRQMLEETKPTTFSELVQISGLSHGTDVWLGNASELIYNGTCELKDVIGCRDDIM
VYLIYAGLEPSLAFKIMESVRKGKGLSIDMEEAMIENDVPLWYIDSCKKIKYMFPKAHAA
AYVLMAVRIAYYKVHHPMYYYASYFTVRAGDFDIGAMNKGSAAVRKVLQDIKDKGFEATA
KDKGLYTVLEIALEMIERGFTFQKVDLYRSSATEFLIDGDTLLPPFNAVTGLGTNAAKQI
VEARKGGEFLSKEDLQKRAKLSKTIIETLDNLGCLEGLPDENQLSLFDL
NT seq
4290 nt
NT seq
+upstream
nt +downstream
nt
gtggatacacaacaacgcatgtcactgttactcagtgacttggaattaccgaacggtatc
attgaagaatactttaacgaagcagtccttgagaagcttcgcgttaataaagcaaaagca
acctggacatttgagatccgcttgccacatgttttaccccaaaacgtttatcaactcttt
acgagtcgcttagtcagtcggtatcagcaattcgccgaagtcaaaatcatcctacatgcg
gatagtcgaccagacgaacgcctgtatcatgattactggccatacgtcgtgcaggatctc
gcagatgtctcatcggcgatgcggacacaacttggacgggtcttaccggagttcaaagaa
cagaaattattcattccggtccggagtgaaccggaagcaggattcttaaaaagtagctta
tgtggtgagttgcagttactttacagtgcttacggatttccgaaattcaactgtgaaccg
attgttcaaatcaacgaatcgaaacaagaagcgttgcgcaatcaggtgaaacaggaagac
atggaagaagcaaaacggatgctcgagttgcaattcaagcgggaacaatcgcgggatgac
gatgaaggaccggttgagatccggatcgggaaaccaattcaagatgagattgtcccgatt
aagacgatccaagatgaggaacgacggattgcgatccgtggtctcgtcttctcggcagag
agtcgtgaactacgaagtggaaagacgatctttacgttcaagatgacggactatacggac
tccctcgtcgtcaagatgtttgcgcgtgacgaaacagacgtcaagatcctctcagccatc
aaaaaagggatgtggatccaggcggcaggtcgcgttgagttcgatacattcctacgcgat
ctctgtatgatgattgcccaactgtcagaagtgaagatggaagcaccggctgacccttgg
gcaggtgagaagcgtgtcgagttacatgcgcactcgcaaatgagtcagatggacgctgtc
atgaacgtgacgaaatacgtcgaacgcgcagcaaaatggggtcatcctgctgttgcgatc
acggatcacgctggcgcccaaagtttcccggatgcctactatgccggaaagaaaaacgat
atcaaggtactatacggaatcgaagcgaatgtcgtcgatgacggggtgcaagtcgcctat
catccggtagaacgtaacttagatgacgcgacattcgtcgtctttgacgtcgagacgact
ggtttatcggcgatgtacaacaaaatcattgaactcgcagccgtcaagatccacgacggt
gatatcatcgataagttcgaagcattcgcggatccgaaacacctgttgtcggcgacgacg
attgatttgacagggatcaccgatgatatggtccgcggaaaaccagacccggaacaagtc
gtcaaggagttcatggactgggtcggcgactcgattctcgttgcccataatgcttcgttt
gatatcgggttcttgaatgcgacactccggtctggtggacacgatgaatcggtcttgccg
gtcattgatacgcttgagctagcccgtgtcttgatgccgacgctaaaaaatcaccgattg
aacacactcgcgaaacgatttgatatcgaattgacgcaacatcaccgcgccatctatgac
gcggaagcgacgggatatttgatggtcaagttgcttcaaatggcagatgagatgttcgac
atgaagacacacgcctcactcaaccgggagatggggaaagatatctcgcgggcacgacca
taccacgcgacggtctatgcgaagaaccggacgggcttgaagaatttgtaccaattgatt
tcgattgctcatacgaaacacgtgcaccgtgtcgtccgcacaccgcgctcgcaactcgtc
gcgcaccgggatggtttgatcatcggatcagcttgcgataatggcgaagtgtttgatgcc
gctttgaacaagtcagacgaagatttagcgaaagtgatgcagttctatgatttcatcgag
attcagccacccgcgatgtatggtcatttgatcgagcgggaaatcgttcagaatgaactc
gaactgcgcgaactgatcaaaaaaatcatccgtgtcgcggaagaacatgatatcttacca
gttgcgacagggaacgtgcattacctcgatcaacatgacgccacgtaccgggagattttg
atccggacgcaaggtggagcgaacatgctgaacatgcgaaaacaactgccaccggcacac
ttccggacgacgaaggaaatgatggatgacttcaagttcctcgggccagatgtatcggaa
cgtctcgtcatcacgaacagtcaagccgtcgcggaacagttcgagaacatcgacatcatt
ccaaaagatctctatacaccaaagatcgaaggggcggatgaagaagttcggaacttgtcg
tacgatatggcgcaccggatttacggagagacgttaccggaaatcgtcgaagcacgactc
gaaaaagagttgaagtcaatcatcggtcacggattcgccgtcatctatttgatttctcat
aaactcgttaaaaaatcactcgacgacggctatttggtcggttcacgggggtcggtcgga
tcaagtctcgttgcgacgatgaccgagatcaccgaagtcaatcccttgccgccacactat
gtctgtccgaattgtaaggaatcggagttcttcgatgacggttctgtcggttcgggattc
gatttaccggataaatcctgttcgaaatgtgatatcccgttatttaaagacggtcatgat
attccgtttgaaacgttccttggatttaaaggggataaagtaccggatatcgatttgaac
ttcagtggagaatatcagccgcaagcacacgcctatacgaaagtcttgttcggtgacgat
tacgtctaccgtgccggaacaatcggaacgattgccgagaagacggcgtatggctatgtc
aaagggtatcagtcggagaatgagctgacgtatcggaatgcggaagtcgatcgtctcgtc
agtggtgtcaccggcgtcaaacgaacgactgggcaacacccaggtgggatcatcgtcgta
ccggactatatggatatttatgatattagtccgattcaatatccggcagatgatatgggt
tctgaatggaagacgacacactttgacttccactcgattcacgataacttactcaaactc
gatatcctcggtcacgatgacccgaccatgattcggatgctacaggatttatcaggacga
gatccgaagacgattccggtcgatgacccggaagtcatgaaaattttcagttcgacggaa
tcgatcggcgtgacgccggagcaaatcgattcaaaaacgggaacgctcggtattcccgag
tttggaacaaagttcgtccgccaaatgttagaagagacgaaaccgacgacgttctcggag
ctcgtccagatttcaggactctcgcacggaacggatgtctggctcggaaacgccagcgaa
ttgatctacaacggaacatgtgaattaaaagacgtcatcggttgtcgagatgacatcatg
gtctacttgatctatgccggtcttgaaccgtcacttgcttttaaaatcatggagtcggtc
cgaaaagggaaaggactctcgattgacatggaagaggcgatgatcgagaacgatgtgccg
ctctggtatatcgattcttgtaagaaaatcaagtacatgttcccgaaagcccatgctgct
gcctatgtcttaatggctgttcggatcgcctactataaagtccatcatccaatgtattac
tacgcttcgtactttacggtacgtgcgggtgactttgatatcggtgcgatgaataaaggc
tctgcagccgtccggaaagtcttgcaagacatcaaggataaaggattcgaggcaacggcg
aaggacaagggattgtacacggttcttgaaatcgcgcttgagatgatcgaacggggcttt
acgttccaaaaggtcgatctctaccgctcaagtgcaacggaattcctcattgacggggat
acgttgttaccaccgtttaatgccgtgacaggtctcgggacgaatgcagcgaagcagatc
gtcgaagcacgtaaaggtggcgaattcctctcgaaggaagacctccaaaaacgtgccaag
ttatcgaaaacgatcatcgagacactcgataacctaggctgtctcgaagggttaccggac
gagaatcagctctccttgttcgacttgtaa
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integrated database retrieval system
