Eggerthella sp. YY7918: EGYY_11780
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Entry
EGYY_11780 CDS
T01566
Symbol
SrmB
Name
(GenBank) superfamily II DNA helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
eyy
Eggerthella sp. YY7918
Pathway
eyy03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
eyy00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
EGYY_11780 (SrmB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
eyy03019
]
EGYY_11780 (SrmB)
Enzymes [BR:
eyy01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
EGYY_11780 (SrmB)
Messenger RNA biogenesis [BR:
eyy03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
EGYY_11780 (SrmB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
AAA_22
Motif
Other DBs
NCBI-ProteinID:
BAK44345
LinkDB
All DBs
Position
complement(1293836..1295350)
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AA seq
504 aa
AA seq
DB search
MLQFNELGLSEHVLQAVARLGYEAPTPVQEQAIPLALEGRDLIAAAKTGTGKTAAFSLPS
LDRVGHAKGGQGPLMLVVTPTRELAQQIGEVCSAIAVSTHHRILTVVGGLSYEPQISKLK
HGVDILIATPGRLVDLMEQGAVRLGDVEVLVLDEADRMLDMGFWPAMKKIIGATPSTRQT
LLFSATIDASIKNSVGKLLHNPAFVEIAHKGETADTVEQYIIHTQQNLKPDLLKALLAEK
GSERVIVFARTRSRADSTCRRLKRAGFTAEAIHSDRSQNQRRRALDNFASGRVGVIVATD
VLARGIDVEEVDYVVNYDLPTQPEDYVHRIGRTGRAGAAGFAVSFVSPETNDALRDIEKL
IKRPIPEMELASYDAETAAAEAAARTARAETRRDPEIKQAAKEMAARERKKAKAREAAQT
DAAASTPTHSAANKKRRTPKKPVGVAGAQPNRQRPSQQQAKKQSSATQGKKPPVSSAPAK
RGGADLRPGRARRASLAQQRTKRR
NT seq
1515 nt
NT seq
+upstream
nt +downstream
nt
atgttgcaattcaatgaactcggcttgtccgagcacgtcctccaggccgtcgcacgtctg
ggttacgaagcacctactcctgttcaagaacaagccattcccctcgccctcgaaggacgc
gaccttattgccgcagcaaaaaccggcaccggcaagacagctgcgttttcgctgccttcc
cttgatcgcgtaggccacgccaagggcggccaaggtcccctcatgctggtggtcacaccc
acgcgcgaactggcgcagcaaattggcgaagtgtgcagcgccatcgcggtatccacgcat
catcgcattctgaccgtcgtgggcggactttcctatgagcctcagatcagcaagctcaag
cacggtgtagacatcctcatcgccacgcccggccgccttgttgacctgatggaacaagga
gcggtacgcctcggcgatgtcgaggtgctggtgctcgacgaggccgaccgtatgctcgat
atgggtttttggccggccatgaaaaagatcatcggcgcgacgccctccacacgccaaacg
cttctgttctcagccaccatcgatgcgtccatcaaaaacagcgtggggaaacttttacac
aatcccgccttcgttgaaatcgcacacaagggcgaaacagccgacaccgtcgaacagtac
atcatccacacgcaacaaaacctcaagcccgacttgctgaaagccctgctcgccgaaaag
ggatccgaacgcgttatcgtattcgcacgcacacgaagccgcgctgactccacctgccgg
cgcctcaagcgtgcaggatttacagccgaagccatccattcagatcgctcgcaaaaccag
cgtcgtcgcgcactcgacaacttcgcaagcggacgggtgggcgttatcgtggctaccgat
gttctcgcacgcggcatcgacgtggaagaggtcgattatgtggtgaattacgatctgccc
acgcagcccgaagactacgtgcatcgtattggccgcacaggacgcgcaggcgcagccgga
ttcgccgtgtcttttgtaagccccgaaaccaacgatgcgcttcgtgacattgagaaactc
atcaagcgacccatccccgagatggagctggcctcctacgatgccgaaaccgccgcggcc
gaggctgccgcacgtaccgcccgcgccgagacgcgacgcgaccccgaaatcaaacaggct
gctaaagagatggccgcgcgtgaacgcaaaaaggcaaaagcacgcgaagcggcgcagaca
gatgccgctgcatcgacgcccactcacagcgcggcgaacaagaaacgtcgcactccgaag
aaacccgttggcgtagctggggcacaaccgaaccgccaacgtccctcccaacagcaggcg
aagaagcagagcagtgcgacacaggggaagaaaccaccggtaagcagcgcacccgccaaa
cgaggcggagccgacttgcgcccgggtcgcgcacgacgcgcctccttagcccagcagcga
accaaacgccgctag
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